[Home] | [Total List]

[189225_s_at] protein kinase

Description R02C2.1 /REP_DB=WormBase Gene ID /WP=CE21086 /TR=O44547 /GB=AAD32717.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 67      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.9
(-3)
A 		4.1
(-2.8)
A 		4.9
(-2.1)
A 		10.6
(3)
A 		7
B 2.8
(-3)
A 		14.5
(3)
A 		6.5
(-1.1)
A 		3.5
(-2.6)
A 		12
C 2.5
(-3)
A 		4
(-1.5)
A 		3
(-2.5)
A 		8.7
(3)
A 		6
avr 3.1
(-3) 		7.5
(2.9) 		4.8
(-0.7) 		7.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.8
(0.4)
A 		8.5
(-1.5)
A 		3.6
(-3)
A 		6.1
(-2.2)
A 		9.5
(-1.2)
A 		23.5
(3)
A 		20
B 4.4
(-2.8)
A 		14.4
(-0.3)
A 		3.9
(-2.9)
A 		3.5
(-3)
A 		3.9
(-2.9)
A 		27.6
(3)
A 		24
C 4.9
(-2.9)
A 		15.3
(-1.8)
A 		4.3
(-3)
A 		5.2
(-2.9)
A 		8.2
(-2.6)
A 		60.9
(3)
A 		57
avr 8
(-2.3) 		12.7
(-1.4) 		3.9
(-3) 		4.9
(-2.8) 		7.2
(-2.4) 		37.3
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(2)
A 		0.9
(-3)
A 		1.3
(1)
A 		1.5
(3)
A 		1
B 0.9
(-2.6)
A 		3.6
(3)
A 		1.5
(-1.3)
A 		0.7
(-3)
A 		3
C 0.8
(-3)
A 		1.2
(0.4)
A 		1
(-1.3)
A 		1.5
(3)
A 		1
avr 1
(-3) 		1.9
(3) 		1.3
(-1) 		1.2
(-1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.7
(-0.7)
A 		3
(-0.3)
A 		0.8
(-3)
A 		1.5
(-2.1)
A 		2.9
(-0.4)
A 		5.7
(3)
A 		5
B 1.5
(-2.6)
A 		4.8
(-0.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.6
(-2.6)
A 		10.3
(3)
A 		9
C 1.8
(-2.8)
A 		4.7
(-1.9)
A 		1.1
(-3)
A 		1
(-3)
A 		2.7
(-2.5)
A 		20.4
(3)
A 		19
avr 2
(-2.4) 		4.2
(-1.2) 		0.9
(-3) 		1.1
(-2.9) 		2.4
(-2.2) 		12.1
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189225_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15017
Sequence Type Exemplar sequence
Representative Public ID R02C2.1 NCBI
Target Description R02C2.1 /REP_DB=WormBase Gene ID /WP=CE21086 /TR=O44547 /GB=AAD32717.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070760(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070760 NCBI Caenorhabditis elegans R02C2.1 (R02C2.1) mRNA, complete cds. 11/11 None
SNAP00000019091 ENSEMBL cdna:SNAP chromosome:CEL140:V:236914:239933:-1 11/11 None
GENEFINDER00000019102 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:236914:238017:-1 11/11 None
R02C2.1 ENSEMBL cdna:known chromosome:CEL140:V:236579:238021:-1 gene:R02C2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:236909-240173(-) 99.95 99.95
Public Domain and Genome References
Gene Title protein kinase
Ensembl R02C2.1
Entrez Gene 178550 Entrez gene
SwissProt O44547 EMBL-EBI
WormBase CE33150 Wormbase
Functional Annotations
Ortholog
ID Title Organism
YEAST_2:1776597_AT Ser/Thr protein kinase involved in salt tolerance; funtions in regulation of Trk1p-Trk2p potassium transporter; partially redundant with Hal5p; has similarity to Npr1p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast G88924 protein R02C2.1 [imported] - Caenorhabditis elegans 0.0
blast AAO21431 Hypothetical protein R02C2.1 [Caenorhabditis elegans] ref|NP_503161.2| R02C2.1 [Caenorhabditis elegans] 1.0E-172
blast AAO21431 Hypothetical protein R02C2.1 [Caenorhabditis elegans] ref|NP_503161.2| R02C2.1 [Caenorhabditis elegans] 1.0E-171
blast G88924 protein R02C2.1 [imported] - Caenorhabditis elegans 1.0E-124
blast AAO21432 Hypothetical protein R02C2.6 [Caenorhabditis elegans] ref|NP_872128.1| R02C2.6 [Caenorhabditis elegans] 1.0E-113
blast NP_001023760 DC2.7c [Caenorhabditis elegans] gb|AAX55694.1| Hypothetical protein DC2.7c [Caenorhabditis elegans] 2.0E-73
Protein Families
Method ID Description E-Value
hanks 2.2.8 CaMK Group; CaMK II KIN1/SNF1/Nim1; BKIN12 4.0E-60
hanks 2.2.8 CaMK Group; CaMK II KIN1/SNF1/Nim1; BKIN12 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-67
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-50
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-67
Sequence
Target Sequence 
>C. ELEGANS:189225_S_AT
gatgcacattcctatttcaagcagctaattaaagggctcaaattcatccatgagcaagga
attgtgcatcgggacatcaagctcgagaacttgcttcttgtatattcagagtccgaagat
gatccaggaactctgaagatcacagatttcggattggcaactaaataccgaaaggatgga
gaggagatcatgttgagcgaggattgcgggtctaagccctatgcagcgccagaagtctgc
acagggaacgattatcgggggccacccgtcgatatctggtcggctggagtcgttttgatg
acgatgcttgttggggagcactcttggaaagttgcaaataaagaaaaagacgcggcctac
agcaactggatcaatgcaaaagacgaaaaggcgaacctgtggaatgtgatctccggacca
acgacggcgcttcttcgcaaacttctccatgcgaaccccgaaaaaagggcaacaatggcg
aaaattgaagcggatccatggttccggtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCACATTCCTATTTCAAGCAGC 439 413 1345 Antisense
AGCTCGAGAACTTGCTTCTTGTATA 568 79 1424 Antisense
GGATTGCGGGTCTAAGCCCTATGCA 608 507 1545 Antisense
GCCCTATGCAGCGCCAGAAGTCTGC 187 281 1560 Antisense
GATATCTGGTCGGCTGGAGTCGTTT 558 425 1615 Antisense
GACGATGCTTGTTGGGGAGCACTCT 315 377 1644 Antisense
GCGGCCTACAGCAACTGGATCAATG 602 293 1696 Antisense
GTGGAATGTGATCTCCGGACCAACG 682 489 1743 Antisense
CTTCTTCGCAAACTTCTCCATGCGA 596 221 1774 Antisense
TTCTCCATGCGAACCCCGAAAAAAG 578 691 1787 Antisense
GAAGCGGATCCATGGTTCCGGTACA 37 343 1831 Antisense
Sequence Source Affymetrix Proprietary Database