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[189223_at]

Description C06A6.4 /REP_DB=WormBase Gene ID /WP=CE27660 /TR=Q17686 /GB=AAA82294.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aminoacylase-1
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 42      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 1005.9
(1.8)
P 		1158.2
(3)
P 		1090
(2.5)
P 		401.3
(-3)
P 		757
B 1270.1
(3)
P 		978.3
(1.1)
P 		1035.2
(1.4)
P 		363.3
(-3)
P 		907
C 1165.1
(3)
P 		1072.1
(2.3)
P 		1067.6
(2.3)
P 		358.5
(-3)
P 		807
avr 1147
(3) 		1069.5
(2.4) 		1064.3
(2.4) 		374.4
(-3) 		773

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1293
1 2 3 4 5 6 range
A 1119.7
(-2)
P 		2152.5
(3)
P 		1986.5
(2.2)
P 		1608.3
(0.4)
P 		1171.8
(-1.7)
P 		909.9
(-3)
P 		1243
B 1311.3
(-1.3)
P 		1535.4
(-0.1)
P 		2096.8
(3)
P 		1184.3
(-2)
P 		1659.8
(0.6)
P 		1005.9
(-3)
P 		1091
C 1361.7
(-1)
P 		1379.4
(-0.9)
P 		2203.3
(3)
P 		1277
(-1.4)
P 		1390.3
(-0.9)
P 		950.7
(-3)
P 		1253
avr 1264.2
(-1.4) 		1689.1
(0.9) 		2095.5
(3) 		1356.5
(-0.9) 		1407.3
(-0.6) 		955.5
(-3) 		1140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 366.2
(3)
P 		251.4
(0.8)
P 		284.9
(1.4)
P 		58.7
(-3)
P 		308
B 405
(3)
P 		241.6
(0)
P 		239.9
(-0)
P 		77.4
(-3)
P 		328
C 385.7
(3)
P 		308.2
(1.6)
P 		372.1
(2.7)
P 		60.4
(-3)
P 		325
avr 385.6
(3) 		267.1
(0.8) 		299
(1.4) 		65.5
(-3) 		320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 559
1 2 3 4 5 6 range
A 206.4
(-3)
P 		765.5
(3)
P 		432.6
(-0.6)
P 		407.9
(-0.8)
P 		353.6
(-1.4)
P 		221.5
(-2.8)
P 		559
B 456.3
(-0.6)
P 		511.1
(0.3)
P 		509.2
(0.3)
P 		313.7
(-3)
P 		674.4
(3)
P 		375.1
(-2)
P 		361
C 504.7
(1.9)
P 		420.9
(0.2)
P 		560.8
(3)
P 		256.8
(-3)
P 		449.9
(0.8)
P 		318.3
(-1.8)
P 		304
avr 389.1
(-1.1) 		565.8
(3) 		500.9
(1.5) 		326.1
(-2.5) 		492.6
(1.3) 		305
(-3) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189223_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10073
Sequence Type Exemplar sequence
Representative Public ID C06A6.4 NCBI
Target Description C06A6.4 /REP_DB=WormBase Gene ID /WP=CE27660 /TR=Q17686 /GB=AAA82294.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=aminoacylase-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026129, NM_001026130
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000040240 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7826453:7829271:-1 None
C06A6.4b ENSEMBL cdna:known chromosome:CEL140:IV:7826356:7829271:-1 gene:C06A6.4 None
C06A6.4a ENSEMBL cdna:known chromosome:CEL140:IV:7826453:7829274:-1 gene:C06A6.4 None
NM_001026130 NCBI Caenorhabditis elegans C06A6.4b (aminoacylase-1) mRNA, complete cds. None
NM_001026129 NCBI Caenorhabditis elegans C06A6.4a (aminoacylase-1) mRNA, complete cds. None
SNAP00000040233 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7826453:7829271:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7826458-7829277(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06A6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28364 Hypothetical protein C06A6.4b [Caenorhabditis elegans] ref|NP_001021301.1| C06A6.4b [Caenorhabditis elegans] 0.0
blast AAA82294 Hypothetical protein C06A6.4a [Caenorhabditis elegans] ref|NP_001021300.1| C06A6.4a [Caenorhabditis elegans] 0.0
blast CAE70896 Hypothetical protein CBG17687 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002933 EMBL-EBI Peptidase M20 1.5E-93
Pfam IPR002933 EMBL-EBI Peptidase M20 1.1E-95
Sequence
Target Sequence 
>C. ELEGANS:189223_AT
aaaagtctcttctagcggagcatccagaatggacagttggagatgtgactacttcaaata
tcacgattattaacggaggagtacaagtaaatgtggtgccggaaaagttcgaagcttaca
ttgatattcgcgtaactccactccaagatctggatgctgttctagcacgtgtagatcaat
gggctaaagaagctggagaaggtgttacctatgaattcatgcaggtactttcattcaatt
ctcacctcactaactcacctaacaagtctccccgttcaactaatccagcggacaagtcga
caatcgatttcgaaacgttctccaatttcaaattgatttctccaaacacccgggaggatc
cattttgggcagcaattgatgatgcacttcaaaaagaaggttgcaaatacaagaaggaga
tcttcatcggagccactgattcacgatttgtcagagcgcaaggaatccgcgccattggct
tctccccaatcatcaatactccatcgcttctgcacgatcacaacgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTCTCTTCTAGCGGAGCATCC 136 133 704 Antisense
CATTGATATTCGCGTAACTCCACTC 219 217 822 Antisense
AACTCCACTCCAAGATCTGGATGCT 547 141 837 Antisense
GGTACTTTCATTCAATTCTCACCTC 166 505 927 Antisense
ACCTCACTAACTCACCTAACAAGTC 504 87 947 Antisense
CTCCCCGTTCAACTAATCCAGCGGA 281 233 971 Antisense
GATTTCTCCAAACACCCGGGAGGAT 246 335 1038 Antisense
GGGAGGATCCATTTTGGGCAGCAAT 344 495 1055 Antisense
GGAGCCACTGATTCACGATTTGTCA 666 521 1132 Antisense
GCGCAAGGAATCCGCGCCATTGGCT 240 289 1159 Antisense
TCGCTTCTGCACGATCACAACGAAT 104 599 1207 Antisense
Sequence Source Affymetrix Proprietary Database