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[189222_at] 7TM chemoreceptor, srx family

Description R13D7.6 /REP_DB=WormBase Gene ID /WP=CE18152 /GB=AAK72302.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_total > 93      4grp_total > 03      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 7.7
(-3)
A 		11.1
(-1.7)
A 		8
(-2.9)
A 		23.1
(3)
A 		15
B 3.7
(-3)
A 		3.9
(-3)
A 		6.6
(-2.6)
A 		51.3
(3)
A 		48
C 22
(-1.7)
A 		8.1
(-2.8)
A 		5.8
(-3)
A 		78.6
(3)
A 		73
avr 11.1
(-2.4) 		7.7
(-2.9) 		6.8
(-3) 		51
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.9
(-0.6)
A 		1.8
(-3)
A 		7
(3)
A 		1.9
(-2.9)
A 		5.4
(1.2)
A 		4.8
(0.5)
A 		5
B 2.9
(-2.9)
A 		5.9
(-2.2)
A 		11.2
(-0.8)
A 		9.8
(-1.2)
A 		25.8
(3)
A 		2.7
(-3)
A 		23
C 4.7
(-1.9)
A 		6.9
(0.1)
A 		3.4
(-3)
A 		3.6
(-2.8)
A 		3.9
(-2.6)
A 		10.2
(3)
A 		7
avr 3.8
(-3) 		4.9
(-2.2) 		7.2
(-0.4) 		5.1
(-2) 		11.7
(3) 		5.9
(-1.4) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.8
(0.2)
A 		2.4
(-1.6)
A 		2.1
(-3)
A 		3.4
(3)
A 		1
B 1.2
(-2.9)
A 		1
(-3)
A 		1.5
(-2.7)
A 		10.9
(3)
A 		10
C 7.3
(-0.2)
A 		2.3
(-2.8)
A 		2
(-3)
A 		13.3
(3)
A 		11
avr 3.8
(-1.4) 		1.9
(-3) 		1.9
(-3) 		9.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-1.9)
A 		0.6
(-2.5)
A 		1.5
(2.5)
A 		0.5
(-3)
A 		1.6
(3)
A 		1.2
(0.8)
A 		1
B 1
(-3)
A 		2
(-2.4)
A 		2.7
(-1.9)
A 		2.6
(-2)
A 		10.5
(3)
A 		1
(-3)
A 		10
C 1.8
(-0.6)
A 		2.1
(0.1)
A 		0.9
(-2.6)
A 		0.7
(-3)
A 		1.3
(-1.7)
A 		3.4
(3)
A 		3
avr 1.2
(-3) 		1.6
(-2.3) 		1.7
(-2.1) 		1.3
(-2.8) 		4.5
(3) 		1.9
(-1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12348
Sequence Type Exemplar sequence
Representative Public ID R13D7.6 NCBI
Target Description R13D7.6 /REP_DB=WormBase Gene ID /WP=CE18152 /GB=AAK72302.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072492 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-9) (srx-9) mRNA, complete cds. 11/11 None
R13D7.6 ENSEMBL cdna:known chromosome:CEL140:V:7396142:7398051:-1 gene:R13D7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7396142-7398052(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-9
Ensembl R13D7.6
Entrez Gene 187859 Entrez gene
SwissProt Q966G9 EMBL-EBI
WormBase CE18152 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504893 Serpentine Receptor, class X family member (srx-9) [Caenorhabditis elegans] gb|AAK72302.1| Serpentine receptor, class x protein 9 [Caenorhabditis elegans] 1.0E-143
blast CAE65415 Hypothetical protein CBG10369 [Caenorhabditis briggsae] 1.0E-69
blast CAE56413 Hypothetical protein CBG24105 [Caenorhabditis briggsae] 3.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504893.1 8 7-29,44-66,79-96,119-138,145-167,177-199,219-241,256-275
R13D7.6 8 7-29,44-66,79-96,119-138,145-167,177-199,219-241,256-275
Sequence
Target Sequence 
>C. ELEGANS:189222_AT
gatgactgttcttatctcagctgctttgttttctgctgcttgcgcacaatacttgtttcc
atgctgcgtatttgtaatcgattacacagtcatggctttggagctagtaacaataaatgg
ggtgcactcatatacaaattccatgttccttgtatacgatagtatttgtacgtctatttc
aatattttgctacattggggtgttcatatcaattcggaattcaaacaagaaagtgtctac
ccaaattcaaaagcaaagaagaaaacaagagattcggtaccttctccaatttatgttcac
ttcagttttctatatcaccacttgggttatatttgaaatactgcagtatataattcctga
caaaaagtttcaaccacacgcaatcataccagcaatgattatacttaactgctcatcaaa
ttctgtaatttttctttctattaacaaggaagtaaaatgctcgttccaatgttcatggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGACTGTTCTTATCTCAGCTGCT 92 413 396 Antisense
CTCAGCTGCTTTGTTTTCTGCTGCT 397 229 411 Antisense
TTTCTGCTGCTTGCGCACAATACTT 158 671 425 Antisense
CACAATACTTGTTTCCATGCTGCGT 128 195 440 Antisense
GATTACACAGTCATGGCTTTGGAGC 91 431 475 Antisense
GGGGTGCACTCATATACAAATTCCA 193 497 514 Antisense
AAATTCCATGTTCCTTGTATACGAT 404 115 531 Antisense
GGTACCTTCTCCAATTTATGTTCAC 268 505 671 Antisense
TCAGTTTTCTATATCACCACTTGGG 450 621 697 Antisense
TCAACCACACGCAATCATACCAGCA 615 631 765 Antisense
AATGCTCGTTCCAATGTTCATGGTT 451 165 851 Antisense
Sequence Source Affymetrix Proprietary Database