[Home] | [Total List]

[189220_at] protein kinase

Description F53C3.1 /REP_DB=WormBase Gene ID /WP=CE19439 /TR=Q9TXU0 /GB=AAC67453.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 77      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.9
(-3)
A 		3.9
(0.5)
A 		4.6
(3)
A 		4.1
(1.2)
A 		2
B 3.4
(0.6)
A 		3.6
(3)
A 		3.1
(-3)
A 		3.4
(0.6)
A 		1
C 2.5
(-3)
A 		3.2
(-2)
A 		2.6
(-2.9)
A 		6.7
(3)
A 		4
avr 2.9
(-3) 		3.6
(-0.7) 		3.4
(-1.3) 		4.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.2
(3)
A 		4.8
(-1.2)
A 		2.9
(-3)
A 		7.3
(1.2)
A 		7.8
(1.7)
A 		5.2
(-0.8)
A 		6
B 3.3
(-3)
A 		4.6
(-2)
A 		3.8
(-2.6)
A 		4.4
(-2.2)
A 		10.1
(2.2)
A 		11.2
(3)
A 		8
C 4.5
(-2.8)
A 		3.6
(-3)
A 		5
(-2.7)
A 		8.6
(-1.8)
A 		5.8
(-2.5)
A 		29.1
(3)
A 		26
avr 5.7
(-2) 		4.3
(-2.8) 		3.9
(-3) 		6.8
(-1.5) 		7.9
(-0.9) 		15.2
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(1)
A 		0.9
(0)
A 		1.2
(3)
A 		0.6
(-3)
A 		1
B 1.1
(3)
A 		0.9
(0)
A 		0.7
(-3)
A 		0.7
(-3)
A 		0
C 0.8
(-3)
A 		0.9
(-1)
A 		0.9
(-1)
A 		1.1
(3)
A 		0
avr 1
(3) 		0.9
(0) 		0.9
(0) 		0.8
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(0.7)
A 		1.7
(0.7)
A 		0.6
(-3)
A 		1.9
(1.3)
A 		2.4
(3)
A 		1.3
(-0.7)
A 		2
B 1.2
(-2.5)
A 		1.5
(-1.9)
A 		0.9
(-3)
A 		1.2
(-2.5)
A 		4.1
(2.8)
A 		4.2
(3)
A 		3
C 1.7
(-2.6)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		1.7
(-2.6)
A 		1.9
(-2.4)
A 		9.7
(3)
A 		9
avr 1.5
(-2.1) 		1.4
(-2.3) 		0.9
(-3) 		1.6
(-2) 		2.8
(-0.3) 		5.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4916
Sequence Type Exemplar sequence
Representative Public ID F53C3.1 NCBI
Target Description F53C3.1 /REP_DB=WormBase Gene ID /WP=CE19439 /TR=Q9TXU0 /GB=AAC67453.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062294(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062294 NCBI Caenorhabditis elegans F53C3.1 (F53C3.1) mRNA, complete cds. 9/11 None
SNAP00000027228 ENSEMBL cdna:SNAP chromosome:CEL140:II:3912040:3913364:1 11/11 None
GENEFINDER00000027237 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3912040:3913364:1 11/11 None
F53C3.1 ENSEMBL cdna:known chromosome:CEL140:II:3912040:3913364:1 gene:F53C3.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3912038-3913363(+) 99.7 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl F53C3.1
Entrez Gene 186157 Entrez gene
SwissProt Q9TXU0 EMBL-EBI
WormBase CE35938 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC67453 Hypothetical protein F53C3.1 [Caenorhabditis elegans] ref|NP_494695.2| F53C3.1 [Caenorhabditis elegans] 0.0
blast CAE60406 Hypothetical protein CBG04011 [Caenorhabditis briggsae] 1.0E-136
blast CAE59131 Hypothetical protein CBG02430 [Caenorhabditis briggsae] 1.0E-135
blast CAE60406 Hypothetical protein CBG04011 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.4E-22
Sequence
Target Sequence 
>C. ELEGANS:189220_AT
gaattgctcgcaagtacctgaacgataagaaggagatgaagacgccaagggagtcggttg
cgttcaaggcgagtggaaccatccgcttcgccccgctctcctgccaccgttacaccgaga
tggggccaaaggatgattgtgagagttggttctaccttctcatcgacctgattctcgagg
gaggacttccatggcgtcactgcaaagtcaagaacgaggtgctgaagatcaaggagaaca
cacggaaagataaccgagcggctctgtacaagggtattccgcagacctccgagctcaaca
agattctggattacattgactcgagagcctaccaggatcgtatcgactataagttcatct
acaaagcgctgggagaggcttgctccaacgccggatgtgacatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGCTCGCAAGTACCTGAACGA 624 321 524 Antisense
GGAGTCGGTTGCGTTCAAGGCGAGT 450 517 573 Antisense
CAAGGCGAGTGGAACCATCCGCTTC 423 183 588 Antisense
TGCCACCGTTACACCGAGATGGGGC 162 587 625 Antisense
CTTCTCATCGACCTGATTCTCGAGG 243 219 679 Antisense
TCGAGGGAGGACTTCCATGGCGTCA 285 603 698 Antisense
GAGCGGCTCTGTACAAGGGTATTCC 560 385 779 Antisense
ACCTCCGAGCTCAACAAGATTCTGG 113 89 808 Antisense
GACTCGAGAGCCTACCAGGATCGTA 302 375 841 Antisense
CGCTGGGAGAGGCTTGCTCCAACGC 532 251 890 Antisense
GCTCCAACGCCGGATGTGACATCAA 696 297 905 Antisense
Sequence Source Affymetrix Proprietary Database