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[189217_at] protein kinase

Description F41G3.5 /REP_DB=WormBase Gene ID /WP=CE01289 /TR=Q20288 /GB=AAA81106.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 98      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 52.8
(1.7)
A 		56.9
(2.3)
A 		61.9
(3)
A 		18.8
(-3)
A 		43
B 62.1
(-0.1)
A 		72.3
(3)
A 		58
(-1.4)
A 		52.7
(-3)
A 		20
C 76.5
(-0.9)
A 		70.4
(-1.3)
A 		44.3
(-3)
A 		134.8
(3)
A 		91
avr 63.8
(0.9) 		66.5
(2) 		54.7
(-3) 		68.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 45.7
(-2.2)
A 		12.4
(-3)
A 		59.8
(-1.9)
P 		52.2
(-2.1)
A 		172.4
(0.8)
P 		267.4
(3)
P 		255
B 61.8
(-2)
A 		37
(-3)
A 		64.7
(-1.8)
A 		101.3
(-0.3)
A 		152.9
(1.8)
P 		181.3
(3)
P 		144
C 39.7
(-3)
A 		65.6
(-1.9)
A 		39
(-3)
A 		65.6
(-1.9)
A 		168.9
(2.2)
P 		187.6
(3)
P 		149
avr 49.1
(-2.6) 		38.3
(-3) 		54.5
(-2.4) 		73
(-1.8) 		164.7
(1.4) 		212.1
(3) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.2
(3)
A 		12.3
(0.5)
A 		16.2
(1.9)
A 		2.7
(-3)
A 		17
B 19.8
(3)
A 		17.8
(1.6)
A 		13.4
(-1.5)
A 		11.2
(-3)
A 		9
C 25.3
(3)
A 		20.2
(-0.1)
A 		15.4
(-3)
A 		22.7
(1.4)
A 		10
avr 21.4
(3) 		16.8
(0) 		15
(-1.2) 		12.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 8.4
(-2.6)
A 		4.4
(-3)
A 		13
(-2.1)
P 		13.2
(-2.1)
A 		52
(1.7)
P 		65.1
(3)
P 		61
B 21.5
(-2)
A 		12.3
(-3)
A 		15.7
(-2.6)
A 		26.8
(-1.4)
A 		62.1
(2.4)
P 		67.6
(3)
P 		55
C 14.7
(-2.5)
A 		20
(-1.9)
A 		9.9
(-3)
A 		13.2
(-2.6)
A 		54.7
(2.1)
P 		62.8
(3)
P 		53
avr 14.9
(-2.7) 		12.2
(-3) 		12.9
(-2.9) 		17.7
(-2.4) 		56.3
(2) 		65.2
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5794
Sequence Type Exemplar sequence
Representative Public ID F41G3.5 NCBI
Target Description F41G3.5 /REP_DB=WormBase Gene ID /WP=CE01289 /TR=Q20288 /GB=AAA81106.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062977 NCBI Caenorhabditis elegans F41G3.5 (F41G3.5) mRNA, complete cds. 11/11 None
SNAP00000017942 ENSEMBL cdna:SNAP chromosome:CEL140:II:6746693:6748520:1 10/11 None
GENEFINDER00000017955 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6747539:6748520:1 11/11 None
F41G3.5 ENSEMBL cdna:known chromosome:CEL140:II:6747539:6748520:1 gene:F41G3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6747534-6748516(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl F41G3.5
Entrez Gene 185631 Entrez gene
SwissProt Q20288 EMBL-EBI
WormBase CE01289 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81106 Hypothetical protein F41G3.5 [Caenorhabditis elegans] ref|NP_495378.1| F41G3.5 [Caenorhabditis elegans] 1.0E-144
blast AAA81106 Hypothetical protein F41G3.5 [Caenorhabditis elegans] ref|NP_495378.1| F41G3.5 [Caenorhabditis elegans] 1.0E-140
blast CAE65955 Hypothetical protein CBG11137 [Caenorhabditis briggsae] 9.0E-77
blast CAE65955 Hypothetical protein CBG11137 [Caenorhabditis briggsae] 2.0E-73
blast CAE68129 Hypothetical protein CBG13774 [Caenorhabditis briggsae] 3.0E-54
blast CAA93431 Hypothetical protein ZK596.2 [Caenorhabditis elegans] ref|NP_502028.1| ZK596.2 [Caenorhabditis elegans] 1.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-14
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-8
Sequence
Target Sequence 
>C. ELEGANS:189217_AT
gatcaatgccatccaacaacttcattccattggattcattcatcgtgacataaaacctgc
caacttttgcataaatctcgacaatccacatcaacttgtgatggtcgattttggaatgtg
ccggaaatatttgaatgatggaggaactcaactgagacatccaagatggtctgttcatgg
ttttaggggaactgttcgatatgcaccactggctactcattatggaagagattcttgtcg
taaagaggatttggaaacaatcttttatgttttggttgaacttttagttggaacattgcc
ttggatgactatggaagaacatattcatgttgagcattctaagcaagttgcaagaactac
gggattgcgtgaattcctctctggatgcccaaaacaacttgttcatattctcctttacat
tgacaatcttcgcttctacgatgcacctgactatgcacttattcgtggattgctcagttt
tgccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAATGCCATCCAACAACTTCAT 682 421 207 Antisense
CATCGTGACATAAAACCTGCCAACT 202 213 247 Antisense
AAATCTCGACAATCCACATCAACTT 313 117 279 Antisense
AGGGGAACTGTTCGATATGCACCAC 43 59 391 Antisense
TATGCACCACTGGCTACTCATTATG 415 657 406 Antisense
ACGGGATTGCGTGAATTCCTCTCTG 643 95 565 Antisense
ATTCCTCTCTGGATGCCCAAAACAA 231 9 579 Antisense
ACAACTTGTTCATATTCTCCTTTAC 298 113 600 Antisense
ACATTGACAATCTTCGCTTCTACGA 55 101 623 Antisense
GCTTCTACGATGCACCTGACTATGC 84 305 638 Antisense
TTCGTGGATTGCTCAGTTTTGCCCT 192 669 668 Antisense
Sequence Source Affymetrix Proprietary Database