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[189216_at] 7TM chemoreceptor, str family

Description R13D7.1 /REP_DB=WormBase Gene ID /WP=CE25973 /GEN=str-41 /GB=AAK72297.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 54      4grp_total > 20      6grp_cgc > 92      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 7.7
(-2.6)
A 		21.7
(-1.3)
A 		3.6
(-3)
A 		66.2
(3)
A 		63
B 35.6
(3)
A 		31.3
(2.2)
A 		17.4
(-0.4)
A 		3.7
(-3)
A 		32
C 33.6
(-0.3)
A 		20.1
(-1.4)
A 		1.2
(-3)
A 		73.2
(3)
A 		72
avr 25.6
(-0.3) 		24.4
(-0.5) 		7.4
(-3) 		47.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 42.7
(0.7)
A 		5.4
(-2.9)
A 		66.7
(3)
A 		25.4
(-1)
A 		6.4
(-2.8)
A 		4.2
(-3)
A 		63
B 8.7
(-2.9)
A 		39
(-0.1)
A 		72.9
(3)
P 		7.1
(-3)
A 		10.7
(-2.7)
A 		38.3
(-0.2)
A 		66
C 18.3
(-0.4)
A 		36.1
(2.7)
A 		5.5
(-2.6)
A 		34.8
(2.5)
A 		3
(-3)
A 		37.8
(3)
A 		35
avr 23.2
(-0.6) 		26.8
(-0.1) 		48.4
(3) 		22.4
(-0.7) 		6.7
(-3) 		26.8
(-0.1) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.8
(-1.7)
A 		4.7
(-0.4)
A 		0.9
(-3)
A 		9.7
(3)
A 		9
B 11.4
(3)
A 		7.7
(0.9)
A 		4
(-1.2)
A 		0.8
(-3)
A 		11
C 11.1
(2.4)
A 		5.8
(-0.3)
A 		0.4
(-3)
A 		12.3
(3)
A 		12
avr 8.4
(3) 		6.1
(0.9) 		1.8
(-3) 		7.6
(2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.9
(0.1)
A 		1.9
(-2.6)
A 		14.5
(3)
A 		6.4
(-0.6)
A 		1.9
(-2.6)
A 		1
(-3)
A 		14
B 3
(-2.6)
A 		13
(1.2)
A 		17.7
(3)
P 		1.9
(-3)
A 		4.4
(-2.1)
A 		14.3
(1.7)
A 		16
C 6.8
(0)
A 		11
(2.2)
A 		1.4
(-2.8)
A 		7
(0.1)
A 		1
(-3)
A 		12.6
(3)
A 		12
avr 5.9
(-0.6) 		8.6
(1.2) 		11.2
(3) 		5.1
(-1.2) 		2.4
(-3) 		9.3
(1.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12065
Sequence Type Exemplar sequence
Representative Public ID R13D7.1 NCBI
Target Description R13D7.1 /REP_DB=WormBase Gene ID /WP=CE25973 /GEN=str-41 /GB=AAK72297.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072498 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-41) (str-41) mRNA, complete cds. 11/11 None
R13D7.1 ENSEMBL cdna:known chromosome:CEL140:V:7414590:7415651:1 gene:R13D7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036726 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7414590-7415652(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-41
Ensembl R13D7.1
Entrez Gene 179129 Entrez gene
SwissProt Q966G3 EMBL-EBI
WormBase CE38214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504899 Seven TM Receptor family member (str-41) [Caenorhabditis elegans] gb|AAK72297.2| Seven tm receptor protein 41 [Caenorhabditis elegans] 0.0
blast NP_503837 Seven TM Receptor family member (str-40) [Caenorhabditis elegans] gb|AAG23999.1| Seven tm receptor protein 40 [Caenorhabditis elegans] 1.0E-110
blast NP_503837 Seven TM Receptor family member (str-40) [Caenorhabditis elegans] gb|AAG23999.1| Seven tm receptor protein 40 [Caenorhabditis elegans] 1.0E-109
blast AAK18945 Seven tm receptor protein 39 [Caenorhabditis elegans] ref|NP_503782.1| Seven TM Receptor family member (str-39) [Caenorhabditis elegans] 6.0E-96
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504899.2 7 10-32,45-67,99-121,134-156,201-223,251-273,283-305
R13D7.1 7 15-37,44-66,98-120,133-155,200-222,250-272,282-304
Sequence
Target Sequence 
>C. ELEGANS:189216_AT
attctatttttgacgtcgccagacggctttacggatgactatttacgagctgaaatcatt
gaaaaatatgagctggacatcgaaaatatagcccgattggtaatgattccgtttgataca
gaaaaaaatttaagaataaataacacagtctacctattcacagtaacttttttcatcact
tgtcagtacttgatcattatttcttgtggcgttcaaatgcacctacaaatgaataagaag
cttctcaaattttctgtgcccaaccggaaacttcagaaacaatttttcaaagctcttctt
gttcaaattacaattccagcaatattatttgtgcttcctgcagtaccatttatgatcggc
ccatttttcaatattaaattcactttgaaatcaggagctgtttgtgcattgcttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTATTTTTGACGTCGCCAGACG 642 7 466 Antisense
TCGCCAGACGGCTTTACGGATGACT 165 587 481 Antisense
GCCCGATTGGTAATGATTCCGTTTG 434 285 556 Antisense
ATAACACAGTCTACCTATTCACAGT 424 25 605 Antisense
GTAACTTTTTTCATCACTTGTCAGT 700 461 628 Antisense
CTTGTGGCGTTCAAATGCACCTACA 231 215 668 Antisense
GAAGCTTCTCAAATTTTCTGTGCCC 130 343 702 Antisense
CTGTGCCCAACCGGAAACTTCAGAA 518 237 719 Antisense
TTATTTGTGCTTCCTGCAGTACCAT 55 679 790 Antisense
GCAGTACCATTTATGATCGGCCCAT 694 309 805 Antisense
AGGAGCTGTTTGTGCATTGCTTGGA 696 55 858 Antisense
Sequence Source Affymetrix Proprietary Database