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[189213_at] Protein kinase

Description C56G2.5 /REP_DB=WormBase Gene ID /WP=CE01874 /TR=Q09516 /GB=AAA64332.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster 6grp_total > 88      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 12.3
(-1.3)
A 		33.2
(3)
A 		3.9
(-3)
A 		9.2
(-1.9)
A 		29
B 5.8
(-3)
A 		24
(1.7)
A 		27.6
(2.6)
A 		29.2
(3)
A 		23
C 19.9
(-1.2)
A 		30.7
(3)
A 		16.9
(-2.3)
A 		15.1
(-3)
A 		16
avr 12.7
(-3) 		29.3
(3) 		16.1
(-1.8) 		17.8
(-1.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		1.2
(-3)
A 		11.1
(-2.2)
A 		12.4
(-2.1)
A 		35.7
(-0.3)
P 		76.9
(3)
P 		76
B 3.7
(-3)
A 		4.9
(-2.9)
A 		3.1
(-3)
A 		20.6
(-1.6)
A 		55.5
(1.1)
P 		79.9
(3)
P 		77
C 1.4
(-3)
A 		11.6
(-2.2)
A 		10.8
(-2.3)
A 		4.6
(-2.7)
A 		50.8
(0.9)
P 		77.1
(3)
P 		76
avr 3
(-3) 		5.9
(-2.8) 		8.3
(-2.6) 		12.5
(-2.2) 		47.3
(0.5) 		78
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.5
(0.4)
A 		7.2
(3)
A 		1
(-3)
A 		1.3
(-2.7)
A 		6
B 1.8
(-3)
A 		5.9
(2.3)
A 		6.4
(3)
A 		6.2
(2.7)
A 		5
C 6.6
(0.9)
A 		8.8
(3)
A 		5.9
(0.2)
A 		2.6
(-3)
A 		6
avr 4.3
(-1.6) 		7.3
(3) 		4.4
(-1.5) 		3.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		0.4
(-3)
A 		2.4
(-2.3)
A 		3.1
(-2.1)
A 		10.8
(0.4)
P 		18.7
(3)
P 		18
B 1.3
(-2.9)
A 		1.6
(-2.8)
A 		0.8
(-3)
A 		5.5
(-2)
A 		22.5
(1.5)
P 		29.8
(3)
P 		29
C 0.5
(-3)
A 		3.5
(-2.3)
A 		2.8
(-2.5)
A 		0.9
(-2.9)
A 		16.4
(0.8)
P 		25.8
(3)
P 		25
avr 0.8
(-3) 		1.8
(-2.8) 		2
(-2.7) 		3.2
(-2.4) 		16.6
(1) 		24.8
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6446
Sequence Type Exemplar sequence
Representative Public ID C56G2.5 NCBI
Target Description C56G2.5 /REP_DB=WormBase Gene ID /WP=CE01874 /TR=Q09516 /GB=AAA64332.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065983 NCBI Caenorhabditis elegans C56G2.5 (C56G2.5) mRNA, complete cds. 11/11 None
SNAP00000001580 ENSEMBL cdna:SNAP chromosome:CEL140:III:6322235:6324174:-1 11/11 None
GENEFINDER00000001592 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6322262:6324174:-1 11/11 None
C56G2.5 ENSEMBL cdna:known chromosome:CEL140:III:6322235:6324174:-1 gene:C56G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6322233-6324173(-) 100.0 100.0
Public Domain and Genome References
Gene Title Protein kinase
Ensembl C56G2.5
Entrez Gene 183867 Entrez gene
SwissProt Q09516 EMBL-EBI
WormBase CE01874 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64332 Hypothetical protein C56G2.5 [Caenorhabditis elegans] ref|NP_498384.1| C56G2.5 [Caenorhabditis elegans] 0.0
blast CAE72518 Hypothetical protein CBG19698 [Caenorhabditis briggsae] 1.0E-163
blast CAE72518 Hypothetical protein CBG19698 [Caenorhabditis briggsae] 1.0E-162
blast AAB92244 protein kinase C-related kinase [Pisaster ochraceus] 4.0E-12
blast AAB92244 protein kinase C-related kinase [Pisaster ochraceus] 5.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.2E-4
Sequence
Target Sequence 
>C. ELEGANS:189213_AT
atgtttgggcggcacggattccgacgttatccaaatcgatcatcagcagtcaacgactat
attatagtcattcatgttggtggaaaagaagtcgcaacaatggtttggaatgagaaaaag
acgatggttggaggtgatgaagagacaattcaattgtttaagtcaaggcaactcgatttt
gaaatctatcacactgatagtcgttcattatgtgctattggatcaatgcaattggaatca
cttcttgatgaacatgatgcaaagtttccatttgccacgtttgcacatagagttgtgaat
ttgataccagaagggacacttcactttcagacaacctattctgatcctgaacagtcaatg
gagaagaaactgggagatacttgtacggatggagtctccaagttagcagtcagcatgcga
aagagtggaagtgttcttgcaagaggttccaaaacattttatagcccaagaacagcgatt
tcactgaatcaattcgtgcctctaaccccatctatgaagtctcgtacaagaagaatcgac
tcattggatagttacagactgatttcggagattggcgttggagcattcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTTGGGCGGCACGGATTCCGAC 330 47 688 Antisense
GATTCCGACGTTATCCAAATCGATC 634 427 704 Antisense
CACTGATAGTCGTTCATTATGTGCT 150 199 879 Antisense
AAAGTTTCCATTTGCCACGTTTGCA 683 121 948 Antisense
GACACTTCACTTTCAGACAACCTAT 248 367 1002 Antisense
GACAACCTATTCTGATCCTGAACAG 599 365 1017 Antisense
GGAGTCTCCAAGTTAGCAGTCAGCA 474 517 1078 Antisense
ATAGCCCAAGAACAGCGATTTCACT 241 21 1148 Antisense
ACTGAATCAATTCGTGCCTCTAACC 345 97 1170 Antisense
TAACCCCATCTATGAAGTCTCGTAC 575 637 1190 Antisense
GGAGATTGGCGTTGGAGCATTCGGA 625 517 1254 Antisense
Sequence Source Affymetrix Proprietary Database