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[189206_at] Cytochrome P450

Description K06G5.2 /REP_DB=WormBase Gene ID /WP=CE18852 /TR=Q9XUT8 /GB=CAB04582.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Cytochrome P450
Cluster 6grp_total > 66      4grp_total > 04      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 30.6
(-0.4)
A 		6.8
(-3)
A 		12
(-2.4)
A 		62.5
(3)
A 		56
B 21.5
(-1.5)
A 		12
(-2.6)
A 		8.6
(-3)
A 		60.9
(3)
P 		52
C 22.1
(-2.6)
A 		24
(-2.2)
A 		20.2
(-3)
A 		47.5
(3)
A 		27
avr 24.7
(-1.5) 		14.3
(-2.9) 		13.6
(-3) 		57
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 16.5
(-2.4)
A 		7.1
(-3)
A 		44.7
(-0.4)
A 		31.6
(-1.3)
A 		13
(-2.6)
A 		94.8
(3)
P 		88
B 41.3
(0.7)
A 		6.1
(-3)
A 		18.8
(-1.7)
A 		13.3
(-2.2)
A 		17.1
(-1.8)
A 		62.6
(3)
P 		57
C 41.2
(-0.8)
A 		27
(-1.8)
A 		62
(0.6)
A 		12
(-2.8)
A 		8.4
(-3)
A 		97.9
(3)
P 		90
avr 33
(-1.3) 		13.4
(-3) 		41.8
(-0.6) 		19
(-2.5) 		12.8
(-3) 		85.1
(3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.1
(3)
A 		1.5
(-3)
A 		3.1
(-2)
A 		9.2
(1.8)
A 		10
B 6.9
(-0.3)
A 		3
(-2.5)
A 		2
(-3)
A 		13
(3)
P 		11
C 7.3
(-0.8)
A 		6.9
(-3)
A 		7.1
(-1.9)
A 		8
(3)
A 		1
avr 8.4
(1.4) 		3.8
(-3) 		4.1
(-2.7) 		10.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 3
(-2.9)
A 		2.5
(-3)
A 		9.7
(-0.9)
A 		8
(-1.4)
A 		3.9
(-2.6)
A 		23.1
(3)
P 		21
B 14.4
(0.5)
A 		2
(-3)
A 		4.6
(-2.3)
A 		3.5
(-2.6)
A 		6.9
(-1.6)
A 		23.3
(3)
P 		21
C 15.3
(-0.5)
A 		8.3
(-1.8)
A 		15.8
(-0.4)
A 		2.4
(-3)
A 		2.7
(-2.9)
A 		32.8
(3)
P 		30
avr 10.9
(-1.2) 		4.3
(-3) 		10
(-1.5) 		4.6
(-2.9) 		4.5
(-2.9) 		26.4
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189206_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18054
Sequence Type Exemplar sequence
Representative Public ID K06G5.2 NCBI
Target Description K06G5.2 /REP_DB=WormBase Gene ID /WP=CE18852 /TR=Q9XUT8 /GB=CAB04582.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077968 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13B2) (cyp-13B2) mRNA, complete cds. 11/11 None
GENEFINDER00000010476 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14225518:14228480:1 11/11 None
SNAP00000010474 ENSEMBL cdna:SNAP chromosome:CEL140:X:14225974:14228480:1 11/11 None
K06G5.2 ENSEMBL cdna:known chromosome:CEL140:X:14225518:14228480:1 gene:K06G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14225604-14228480(+) 100.0 100.0
Public Domain and Genome References
Gene Title Cytochrome P450
Gene Symbol cyp-13B2
Ensembl K06G5.2
Entrez Gene 187068 Entrez gene
SwissProt Q9XUT8 EMBL-EBI
WormBase CE37720 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1630802_AT dm
DROSGENOME1:152949_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04582 Hypothetical protein K06G5.2 [Caenorhabditis elegans] ref|NP_510369.2| CYtochrome P450 family member (cyp-13B2) [Caenorhabditis elegans] 0.0
blast CAE61451 Hypothetical protein CBG05342 [Caenorhabditis briggsae] 0.0
blast CAB54208 Hypothetical protein F02C12.5c [Caenorhabditis elegans] emb|CAB54200.1| Hypothetical protein F02C12.5c [Caenorhabditis elegans] ref|NP_510233.1| CYtochrome P450 family member (cyp-13B1) [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
p450 CP11_MESAU Animalia; CYP1A1; ham; CP11_MESAU; Hamster; Q00557 1.0E-107
p450 CPA7_HUMAN Animalia; CYP2A7; hum; CPA7_HUMAN; Homo sapiens; P20853 1.0E-112
p450 CPA7_HUMAN Animalia; CYP2A7; hum; CPA7_HUMAN; Homo sapiens; P20853 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.1E-79
Pfam IPR001128 EMBL-EBI Cytochrome P450 7.9E-75
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.3E-74
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510369.2 1 2-24
K06G5.2 1 2-24
GENEFINDER00000010476 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:189206_AT
ttgttttgtgtttttgctagccggctttgacacaactgcaaatactttggcttacgcctc
ttatctactagcaaaacatccacaagaaatgagaaaggtgcaagatgaaattgacagaat
atgcacatcagaacacatttcctatgatgatattggaaaattgaggtatatggatgcagt
gataagagaagctttgagaatgtatccagttgcctggttcgcttgctcaagagaatgcgt
tcaagcaacaacacttggtaattactatatcgaaaaaggagtccgaattgaagctgatgt
gagagctttgcattattctgaagagatctggggaaagaatgctaacgagtttgtaccaga
aagatggctcgaatcctcacctcgtcataacatgtcttggataccgtttggtgcaggtcc
tcgacagtgtgttggaatgcgtcttggactttctgaggcaaaaactgcacttgctcattt
gctccgaagattctctattttggctggtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTTTGTGTTTTTGCTAGCCGGC 538 705 1023 Antisense
TTTGCTAGCCGGCTTTGACACAACT 9 665 1035 Antisense
GCAAATACTTTGGCTTACGCCTCTT 21 319 1060 Antisense
TTACGCCTCTTATCTACTAGCAAAA 255 683 1074 Antisense
ATGTATCCAGTTGCCTGGTTCGCTT 614 47 1222 Antisense
AGAAAGATGGCTCGAATCCTCACCT 156 73 1380 Antisense
CTCACCTCGTCATAACATGTCTTGG 312 229 1398 Antisense
TGGATACCGTTTGGTGCAGGTCCTC 654 549 1420 Antisense
GCAGGTCCTCGACAGTGTGTTGGAA 3 311 1435 Antisense
GCGTCTTGGACTTTCTGAGGCAAAA 625 291 1461 Antisense
GAAGATTCTCTATTTTGGCTGGTCC 52 339 1508 Antisense
Sequence Source Affymetrix Proprietary Database