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[189205_at] kinesin

Description M7.2 /REP_DB=WormBase Gene ID /WP=CE23882 /GEN=klc-1 /TR=Q21592 /GB=CAA92746.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 07      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 159.3
(2.3)
P 		133.3
(-3)
P 		155.6
(1.5)
P 		163
(3)
P 		30
B 142.4
(0.8)
P 		121
(-3)
P 		141.9
(0.7)
P 		154.8
(3)
P 		34
C 171.4
(1.3)
P 		110.9
(-3)
P 		167.6
(1)
P 		196.1
(3)
P 		85
avr 157.7
(1.4) 		121.7
(-3) 		155
(1) 		171.3
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 198.3
(-2.5)
P 		156.2
(-3)
P 		200.9
(-2.4)
P 		299
(-1.1)
P 		497.2
(1.4)
P 		616
(3)
P 		460
B 115.6
(-3)
P 		136.2
(-2.8)
P 		206.2
(-2.1)
P 		265.7
(-1.5)
P 		572.2
(1.4)
P 		734.1
(3)
P 		619
C 120.4
(-3)
P 		152.7
(-2.7)
P 		215.4
(-2.1)
P 		312.6
(-1.3)
P 		455.3
(0)
P 		786.5
(3)
P 		666
avr 144.8
(-3) 		148.4
(-3) 		207.5
(-2.3) 		292.4
(-1.4) 		508.2
(0.8) 		712.2
(3) 		567
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 58
(3)
P 		28.9
(-2.1)
P 		40.7
(-0)
P 		23.9
(-3)
P 		34
B 45.4
(3)
P 		29.9
(-3)
P 		32.9
(-1.8)
P 		33
(-1.8)
P 		16
C 56.7
(2.6)
P 		31.9
(-3)
P 		58.4
(3)
P 		33.1
(-2.7)
P 		27
avr 53.4
(3) 		30.2
(-2.9) 		44
(0.6) 		30
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 36.6
(-3)
P 		55.6
(-2)
P 		43.8
(-2.6)
P 		75.8
(-0.9)
P 		150
(3)
P 		150
(3)
P 		113
B 40.2
(-3)
P 		45.3
(-2.9)
P 		50.1
(-2.7)
P 		70.4
(-2.2)
P 		232.5
(1.9)
P 		273.8
(3)
P 		234
C 44.6
(-3)
P 		46.6
(-2.9)
P 		54.8
(-2.7)
P 		62.9
(-2.5)
P 		147.3
(-0.2)
P 		263.3
(3)
P 		219
avr 40.5
(-3) 		49.2
(-2.7) 		49.6
(-2.7) 		69.7
(-2.1) 		176.6
(1.3) 		229
(3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9319
Sequence Type Exemplar sequence
Representative Public ID M7.2 NCBI
Target Description M7.2 /REP_DB=WormBase Gene ID /WP=CE23882 /GEN=klc-1 /TR=Q21592 /GB=CAA92746.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069665 NCBI Caenorhabditis elegans M7.2 (kinesin) mRNA, complete cds. 11/11 None
SNAP00000010382 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11084100:11085831:1 11/11 None
GENEFINDER00000010396 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11084100:11085831:1 11/11 None
M7.2 ENSEMBL cdna:known chromosome:CEL140:IV:11084077:11085987:1 gene:M7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11084105-11085837(+) 100.0 100.0
Public Domain and Genome References
Gene Title kinesin
Gene Symbol klc-1
Ensembl M7.2
Entrez Gene 178007 Entrez gene
SwissProt Q21592 EMBL-EBI
WormBase CE23882 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5871 kinesin complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3777 microtubule motor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92746 Hypothetical protein M7.2 [Caenorhabditis elegans] ref|NP_502066.1| M7.2 [Caenorhabditis elegans] 0.0
blast CAA82752 kinesin light chain (isoform 1) [Caenorhabditis elegans] 1.0E-123
blast H89052 protein C18C4.10 [imported] - Caenorhabditis elegans 1.0E-123
blast CAA82752 kinesin light chain (isoform 1) [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 1.0E-7
Pfam IPR001440 EMBL-EBI TPR repeat 0.0014
Pfam IPR001440 EMBL-EBI TPR repeat 0.0030
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 1.0E-7
Pfam IPR001440 EMBL-EBI TPR repeat 0.0014
Pfam IPR001440 EMBL-EBI TPR repeat 0.0030
Pfam IPR001440 EMBL-EBI TPR repeat 1.7E-4
Pfam IPR001440 EMBL-EBI TPR repeat 1.0E-7
Pfam IPR001440 EMBL-EBI TPR repeat 0.0014
Pfam IPR001440 EMBL-EBI TPR repeat 0.0030
Sequence
Target Sequence 
>C. ELEGANS:189205_AT
atcttctaggacccaatcatccggatgttgctaaacagctcacaaacctcggaattgtca
cccaacagcttgaaaagtatgaagaaacagaaaactatttcaaacaagctctgtcaatct
ataatcgtgcatttccggaaaatcatcaaaatgtgattaagacaaaaaaccaactggcgt
ctgttttcttaaagcaaggaaagtatcaagaggctgaagagatgtacaagaacattctct
cgaaagttgctatcaccggaaacaaaccaatatggagaatcgctgaagatcgcgaagaaa
gacagcgaaatgggattccgaaggttgacgatgaatcctttaatgtgaacccgacaactg
tgatggatagcaatgtgatgtcaactataaagaatttggcagcagtttatcgtaagcaag
gaaaagaggaagctgcagggacgctggaagaagctttaggtgcgaaaaaacaaatcaacg
gaggagcagatcacactaattctactgcctcaagtgttgaaacttcaagcgccgtagcta
ttaatcctgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCTAGGACCCAATCATCCGGA 125 31 962 Antisense
TGCTAAACAGCTCACAAACCTCGGA 309 579 990 Antisense
TCGGAATTGTCACCCAACAGCTTGA 349 603 1010 Antisense
GTCAATCTATAATCGTGCATTTCCG 540 463 1074 Antisense
ACTGGCGTCTGTTTTCTTAAAGCAA 271 97 1134 Antisense
TTCTCTCGAAAGTTGCTATCACCGG 197 693 1196 Antisense
GATGAATCCTTTAATGTGAACCCGA 612 411 1291 Antisense
GTGAACCCGACAACTGTGATGGATA 208 481 1306 Antisense
GAGGAAGCTGCAGGGACGCTGGAAG 420 405 1387 Antisense
ATCACACTAATTCTACTGCCTCAAG 286 27 1451 Antisense
AGCGCCGTAGCTATTAATCCTGCTC 519 81 1489 Antisense
Sequence Source Affymetrix Proprietary Database