[Home] | [Total List]

[189204_at] gluconokinase

Description F26D11.1 /REP_DB=WormBase Gene ID /WP=CE17705 /TR=O61968 /GB=AAC17745.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=gluconokinase
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 81      6grp_total > 55      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 229.3
(0.1)
P 		173.3
(-1.5)
P 		122
(-3)
P 		326.7
(3)
P 		205
B 143.5
(-1.2)
P 		162.6
(1)
P 		127.2
(-3)
P 		180.4
(3)
P 		53
C 163.2
(-0.2)
P 		147.2
(-1.5)
P 		129.6
(-3)
P 		201
(3)
P 		71
avr 178.7
(-0.1) 		161
(-1.1) 		126.3
(-3) 		236
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 270.3
(-1)
P 		352.4
(1.6)
P 		301.9
(-0)
P 		289.9
(-0.4)
P 		207.1
(-3)
P 		397.9
(3)
P 		191
B 207.6
(-3)
P 		276.6
(-0.3)
P 		359.8
(3)
P 		317.5
(1.3)
P 		206.8
(-3)
P 		249.4
(-1.3)
P 		153
C 250.8
(-0.5)
P 		297
(1.7)
P 		323.2
(3)
P 		221.2
(-1.9)
P 		198.6
(-3)
P 		240
(-1)
P 		125
avr 242.9
(-1.1) 		308.7
(2.1) 		328.3
(3) 		276.2
(0.5) 		204.2
(-3) 		295.8
(1.4) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 83.5
(3)
P 		37.6
(-2.3)
P 		31.9
(-3)
P 		47.8
(-1.2)
P 		52
B 45.8
(3)
P 		40.2
(0.9)
P 		29.5
(-3)
P 		38.5
(0.3)
P 		16
C 54
(3)
P 		42.3
(-0.5)
P 		45.2
(0.4)
P 		33.9
(-3)
P 		20
avr 61.1
(3) 		40
(-1.9) 		35.5
(-3) 		40.1
(-1.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 49.8
(-3)
P 		125.3
(3)
P 		65.8
(-1.7)
P 		73.5
(-1.1)
P 		62.5
(-2)
P 		96.9
(0.7)
P 		76
B 72.2
(-3)
P 		92.1
(2.7)
P 		87.4
(1.4)
P 		84.1
(0.4)
P 		84
(0.4)
P 		93
(3)
P 		21
C 92.9
(3)
P 		90.6
(2.7)
P 		82.3
(1.7)
P 		44.5
(-3)
P 		64.3
(-0.5)
P 		80.4
(1.5)
P 		48
avr 71.6
(-2.3) 		102.7
(3) 		78.5
(-1.1) 		67.4
(-3) 		70.3
(-2.5) 		90.1
(0.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12506
Sequence Type Exemplar sequence
Representative Public ID F26D11.1 NCBI
Target Description F26D11.1 /REP_DB=WormBase Gene ID /WP=CE17705 /TR=O61968 /GB=AAC17745.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=gluconokinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072651(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072651 NCBI Caenorhabditis elegans F26D11.1 (gluconokinase) mRNA, complete cds. 9/11 None
F26D11.1 ENSEMBL cdna:known chromosome:CEL140:V:7984485:7985228:1 gene:F26D11.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7982561-7985229(+) 100.0 100.0
Public Domain and Genome References
Gene Title gluconokinase
Ensembl F26D11.1
Entrez Gene 184972 Entrez gene
SwissProt O61968 EMBL-EBI
WormBase CE30765 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265382_AT shikimate kinase family protein at
CANINE_2:CFAAFFX.3054.1.S1_AT similar to RIKEN cDNA 5133401N09 cfa
CHICKEN:GGA.8770.2.S1_A_AT similar to RIKEN cDNA 5133401N09 gga
HU35KSUBD:RC_W69675_AT chromosome 9 open reading frame 103 hs
U133_X3P:HS.103158.0.A1_3P_AT chromosome 9 open reading frame 103 hs
HG-U133_PLUS_2:227865_AT chromosome 9 open reading frame 103 hs
HG-U133B:227865_AT chromosome 9 open reading frame 103 hs
HG-U95B:56186_AT chromosome 9 open reading frame 103 hs
HG-U133_PLUS_2:239086_AT Chromosome 9 open reading frame 103 hs
HG-U133B:239086_AT Chromosome 9 open reading frame 103 hs
HG-U95C:65241_AT Chromosome 9 open reading frame 103 hs
HU35KSUBD:RC_W92712_AT Chromosome 9 open reading frame 103 hs
U133_X3P:HS.143672.0.A1_3P_AT Chromosome 9 open reading frame 103 hs
MOUSE430_2:1424496_AT RIKEN cDNA 5133401N09 gene mm
MOUSE430A_2:1424496_AT RIKEN cDNA 5133401N09 gene mm
MOE430A:1424496_AT RIKEN cDNA 5133401N09 gene mm
MU11KSUBB:MSA.26324.0_S_AT RIKEN cDNA 5133401N09 gene mm
MG-U74AV2:97324_AT RIKEN cDNA 5133401N09 gene mm
MOE430B:1439690_AT RIKEN cDNA 5133401N09 gene mm
MOUSE430_2:1439690_AT RIKEN cDNA 5133401N09 gene mm
MG-U74CV2:170222_F_AT RIKEN cDNA 5133401N09 gene, mRNA (cDNA clone MGC:25845 IMAGE:4192995) mm
MU19KSUBC:TC40379_AT RIKEN cDNA 5133401N09 gene, mRNA (cDNA clone MGC:25845 IMAGE:4192995) mm
RAE230B:1395440_AT similar to RIKEN cDNA 5133401N09 rn
RAT230_2:1395440_AT similar to RIKEN cDNA 5133401N09 rn
RG-U34C:RC_AI071170_AT Similar to RIKEN cDNA 5133401N09 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8652 amino acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4765 shikimate kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17745 Hypothetical protein F26D11.1 [Caenorhabditis elegans] ref|NP_505052.2| F26D11.1 [Caenorhabditis elegans] 3.0E-95
blast CAE64019 Hypothetical protein CBG08614 [Caenorhabditis briggsae] 6.0E-48
blast ZP_00659208 Carbohydrate kinase, thermoresistant glucokinase [Nocardioides sp. JS614] gb|EAO05987.1| Carbohydrate kinase, thermoresistant glucokinase [Nocardioides sp. JS614] 9.0E-34
Sequence
Target Sequence 
>C. ELEGANS:189204_AT
tgagaagctcagacggccattcaaagatggtgatactttccattcacctgaaaatgtaga
gaaaatgaaagccggcacaccactgaatgattctgatagacttccatggcttcaagctat
taacaactacgcaagactcaatcaaggatacgttatcgcttgttctgcgcttaaaagacg
ttatagatccattctttgtgaacatcttcccaatggagccagcggaagagctgttttcat
tctgttgaatttaaaaaggcaagtaatgttcagcgcgcaaaaaaatgtggtgaaagaaat
gggcagaaaagtgaaaatggacaacaaacaactcaaattcgcactcgcttccgtccgctc
gttttcccactttcacacattttcacgcattcatcgtttcattttttgcagggaagttct
tcagcaacgcgtgaattcccgtcccggacacttcatgccatctactttacttgatagtca
gctggctacacttgaacttccgagtcccgatgaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAAGCTCAGACGGCCATTCAAA 480 567 348 Antisense
CCGGCACACCACTGAATGATTCTGA 498 265 419 Antisense
GATTCTGATAGACTTCCATGGCTTC 224 433 436 Antisense
TACGTTATCGCTTGTTCTGCGCTTA 696 647 496 Antisense
GAACATCTTCCCAATGGAGCCAGCG 224 351 547 Antisense
AACAACTCAAATTCGCACTCGCTTC 229 135 674 Antisense
ACATTTTCACGCATTCATCGTTTCA 597 105 724 Antisense
TCTTCAGCAACGCGTGAATTCCCGT 506 615 765 Antisense
ACACTTCATGCCATCTACTTTACTT 436 111 795 Antisense
AGTCAGCTGGCTACACTTGAACTTC 32 61 823 Antisense
TGAACTTCCGAGTCCCGATGAATCA 6 575 840 Antisense
Sequence Source Affymetrix Proprietary Database