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[189203_at] protein kinase

Description F40A3.5 /REP_DB=WormBase Gene ID /WP=CE10150 /TR=O16262 /GB=AAB65324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 4grp_high_8_8 > 27      6grp_total > 23      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 88.6
(0.9)
P 		64.1
(-2.4)
A 		59.3
(-3)
A 		103.9
(3)
P 		45
B 107.7
(3)
P 		81.1
(-1)
P 		76.8
(-1.6)
P 		67.8
(-3)
P 		40
C 84.7
(0.8)
P 		93.2
(1.8)
P 		53.2
(-3)
P 		103.6
(3)
P 		50
avr 93.7
(3) 		79.5
(0.2) 		63.1
(-3) 		91.8
(2.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 119.6
(3)
P 		85.9
(0.4)
M 		76.5
(-0.4)
P 		88.7
(0.6)
P 		91.9
(0.8)
M 		42.7
(-3)
M 		77
B 84.2
(3)
A 		78.9
(2.4)
M 		82.5
(2.8)
M 		54.4
(-0.3)
P 		39.5
(-1.9)
A 		29.3
(-3)
P 		55
C 86.4
(2.4)
P 		60.1
(-0.3)
A 		92.6
(3)
A 		82.2
(2)
A 		52.6
(-1)
P 		32.6
(-3)
A 		60
avr 96.7
(3) 		75
(0.9) 		83.9
(1.8) 		75.1
(0.9) 		61.3
(-0.4) 		34.9
(-3) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 32.3
(3)
P 		13.9
(-3)
A 		15.5
(-2.5)
A 		15.2
(-2.6)
P 		18
B 34.3
(3)
P 		20
(-1.3)
P 		17.8
(-2)
P 		14.4
(-3)
P 		20
C 28
(3)
P 		26.8
(2.3)
P 		18.6
(-2.4)
P 		17.5
(-3)
P 		11
avr 31.5
(3) 		20.2
(-1.3) 		17.3
(-2.4) 		15.7
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 22
(0.4)
P 		30.6
(3)
M 		16.7
(-1.1)
P 		22.5
(0.6)
P 		27.7
(2.1)
M 		10.4
(-3)
M 		20
B 29.3
(3)
A 		26.3
(2)
M 		20
(-0)
M 		14.4
(-1.9)
P 		16
(-1.3)
A 		10.9
(-3)
P 		18
C 32
(3)
P 		18.3
(-0.9)
A 		23.6
(0.6)
A 		16.5
(-1.4)
A 		17
(-1.3)
P 		10.9
(-3)
A 		21
avr 27.8
(3) 		25.1
(2.1) 		20.1
(0.3) 		17.8
(-0.5) 		20.2
(0.3) 		10.7
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189203_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11617
Sequence Type Exemplar sequence
Representative Public ID F40A3.5 NCBI
Target Description F40A3.5 /REP_DB=WormBase Gene ID /WP=CE10150 /TR=O16262 /GB=AAB65324.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072627 NCBI Caenorhabditis elegans F40A3.5 (F40A3.5) mRNA, complete cds. 11/11 None
SNAP00000025354 ENSEMBL cdna:SNAP chromosome:CEL140:V:7871391:7873306:-1 10/11 None
GENEFINDER00000025361 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7871422:7873306:-1 11/11 None
F40A3.5 ENSEMBL cdna:known chromosome:CEL140:V:7871128:7873306:-1 gene:F40A3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7871857-7873307(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinase
Ensembl F40A3.5
Entrez Gene 179167 Entrez gene
SwissProt O16262 EMBL-EBI
WormBase CE30783 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65324 Hypothetical protein F40A3.5 [Caenorhabditis elegans] ref|NP_505028.2| F40A3.5 [Caenorhabditis elegans] 0.0
blast CAE73162 Hypothetical protein CBG20555 [Caenorhabditis briggsae] 1.0E-176
blast CAE73162 Hypothetical protein CBG20555 [Caenorhabditis briggsae] 1.0E-173
blast CAE73162 Hypothetical protein CBG20555 [Caenorhabditis briggsae] 1.0E-145
blast CAG06663 unnamed protein product [Tetraodon nigroviridis] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-11
Pfam IPR000719 EMBL-EBI Protein kinase 7.3E-11
Pfam IPR000719 EMBL-EBI Protein kinase 1.9E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505028.2 1 20-42
F40A3.5 1 20-42
SNAP00000025354 1 20-42
GENEFINDER00000025361 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:189203_AT
gaggatgcacttcgactttcaaaacttgatcatcctaatttgattcgcctactcgcagtt
tcacagctctcttttactgttttccgtccgatgatagctttggagtggctacccggagga
actcttgccgactattttcaatttaaagtcagggaaaaggatgattccgaacggagtcca
atccagttgaaggacatgctctcaatcctttatcaagtttctcaggcactcaagtatatt
cacagtcagctggatgagtttggacaagagctaacccatggtagaatcttcacccgaaat
gttcttgtcacggaaccggatctccgaaaatgtgaggtcaaattgggtgactttggggat
gcaccaatgggattagaatactctactccaataattgcctacatgccacctgaaattctg
tgctgtgctgaacgaattccaccacatcgacctgaaaacgatgtttggatgtttggagta
tttatctgggaatgcttgacactgggggctcagccacatttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATGCACTTCGACTTTCAAAAC 303 403 445 Antisense
TAATTTGATTCGCCTACTCGCAGTT 584 633 480 Antisense
CACAGCTCTCTTTTACTGTTTTCCG 249 195 506 Antisense
ACTGTTTTCCGTCCGATGATAGCTT 320 97 520 Antisense
TACCCGGAGGAACTCTTGCCGACTA 52 649 554 Antisense
GATTCCGAACGGAGTCCAATCCAGT 626 431 607 Antisense
AACCCATGGTAGAATCTTCACCCGA 327 143 717 Antisense
CTTCACCCGAAATGTTCTTGTCACG 677 217 732 Antisense
ATAATTGCCTACATGCCACCTGAAA 659 25 835 Antisense
GTGCTGTGCTGAACGAATTCCACCA 242 479 864 Antisense
ACACTGGGGGCTCAGCCACATTTTA 391 101 943 Antisense
Sequence Source Affymetrix Proprietary Database