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[189197_at] actin-binding

Description C23F12.2 /REP_DB=WormBase Gene ID /WP=CE04046 /TR=Q18109 /GB=AAB37032.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=actin-binding
Cluster 4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_total > 11      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 181.9
(1.3)
P 		136.8
(-3)
P 		141.7
(-2.5)
P 		200.3
(3)
P 		64
B 164.1
(3)
P 		147.8
(1.4)
P 		104.7
(-3)
P 		106.9
(-2.8)
P 		59
C 162.3
(-1.4)
P 		155.3
(-2.4)
P 		150.6
(-3)
P 		195.8
(3)
P 		45
avr 169.4
(3) 		146.6
(-0.7) 		132.3
(-3) 		167.7
(2.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 20.3
(-2.6)
A 		128.6
(3)
P 		50.3
(-1)
A 		12.5
(-3)
A 		14.1
(-2.9)
A 		16.4
(-2.8)
A 		116
B 73.8
(2.6)
A 		78
(3)
A 		49.4
(0)
A 		36.2
(-1.4)
A 		20.6
(-3)
A 		34.6
(-1.5)
A 		57
C 45.4
(-0.9)
A 		95.6
(2.2)
A 		108.7
(3)
A 		52.1
(-0.5)
A 		11.1
(-3)
A 		61.8
(0.1)
A 		98
avr 46.5
(-0.8) 		100.7
(3) 		69.5
(0.8) 		33.6
(-1.7) 		15.3
(-3) 		37.6
(-1.4) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 66.2
(3)
P 		29.7
(-2.9)
P 		37
(-1.7)
P 		29.3
(-3)
P 		37
B 52.3
(3)
P 		36.5
(-0.2)
P 		24.3
(-2.7)
P 		22.8
(-3)
P 		30
C 53.7
(3)
P 		44.6
(0.4)
P 		52.5
(2.7)
P 		33
(-3)
P 		21
avr 57.4
(3) 		36.9
(-1.2) 		37.9
(-1) 		28.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 3.7
(-2.9)
A 		45.7
(3)
P 		11
(-1.9)
A 		3.2
(-3)
A 		4.3
(-2.8)
A 		4
(-2.9)
A 		43
B 25.7
(2.9)
A 		26
(3)
A 		12
(-1.8)
A 		9.6
(-2.6)
A 		8.4
(-3)
A 		12.9
(-1.5)
A 		18
C 16.8
(0.1)
A 		29.2
(3)
A 		27.7
(2.6)
A 		10.5
(-1.4)
A 		3.6
(-3)
A 		20.7
(1)
A 		26
avr 15.4
(-0.9) 		33.6
(3) 		16.9
(-0.6) 		7.8
(-2.5) 		5.4
(-3) 		12.5
(-1.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189197_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16506
Sequence Type Exemplar sequence
Representative Public ID C23F12.2 NCBI
Target Description C23F12.2 /REP_DB=WormBase Gene ID /WP=CE04046 /TR=Q18109 /GB=AAB37032.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=actin-binding
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077178 NCBI Caenorhabditis elegans C23F12.2 (actin-binding) mRNA, complete cds. 11/11 None
C23F12.2 ENSEMBL cdna:known chromosome:CEL140:X:9397682:9407991:1 gene:C23F12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036465 8/11 Cross Hyb Matching Probes None
SNAP00000036460 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9397681-9407991(+) 100.0 100.0
Public Domain and Genome References
Gene Title actin-binding
Ensembl C23F12.2
Entrez Gene 182810 Entrez gene
SwissProt Q18109 EMBL-EBI
WormBase CE04046 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37032 Hypothetical protein C23F12.2 [Caenorhabditis elegans] ref|NP_509579.1| C23F12.2 [Caenorhabditis elegans] 0.0
blast CAE69825 Hypothetical protein CBG16146 [Caenorhabditis briggsae] 1.0E-179
blast CAE69824 Hypothetical protein CBG16145 [Caenorhabditis briggsae] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.9E-28
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 5.7E-23
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 4.2E-11
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.2E-7
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.2E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.9E-7
Sequence
Target Sequence 
>C. ELEGANS:189197_AT
gtcacggtcgtgagattccattgtcaatcgaagagcagggtagttctaaggtacatcaag
tttcattcactccggacggcgctggtcaatacaaaatccacgttctttttaacagaatgg
aaattaaaggatctccattcattttggacattgccgatgcttcgtctgtatccgtatacg
gggagaacttgagatcagcatccgttggcaaaactgcatcatttatggttcatgcgatcg
gagcagaggcaaaagacattagtgctcatgtgacagtcccatcgggaggcaagtttcctg
caaaggttgtcacactggacgatgtcacgtttcaaatcgaatggaccccaaaagagccag
gtttgtgtgtcggaaatatgcaaaaagggtgtgagggggtccaaaatttgatttgttctg
cttgtcttttctttttagtcaaatacacacgacatgcatccccaatcatcattcgtttaa
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACGGTCGTGAGATTCCATTGTC 113 465 2120 Antisense
ACATCAAGTTTCATTCACTCCGGAC 704 103 2172 Antisense
TTTGGACATTGCCGATGCTTCGTCT 129 665 2262 Antisense
GCTTCGTCTGTATCCGTATACGGGG 395 305 2278 Antisense
GAACTTGAGATCAGCATCCGTTGGC 140 351 2304 Antisense
TTAGTGCTCATGTGACAGTCCCATC 318 681 2378 Antisense
AGTCCCATCGGGAGGCAAGTTTCCT 184 59 2394 Antisense
GTCACACTGGACGATGTCACGTTTC 152 465 2428 Antisense
TTGATTTGTTCTGCTTGTCTTTTCT 600 705 2527 Antisense
TCAAATACACACGACATGCATCCCC 101 629 2558 Antisense
CATCCCCAATCATCATTCGTTTAAT 609 211 2576 Antisense
Sequence Source Affymetrix Proprietary Database