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[189190_s_at] helicase domain

Description R03D7.2 /REP_DB=WormBase Gene ID /WP=CE01610 /TR=Q09594 /GB=CAA86856.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=helicase domain
Cluster 6grp_total > 80      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 88.2
(-3)
A 		120
(-0.2)
A 		114
(-0.7)
A 		156.1
(3)
A 		68
B 64.5
(-3)
A 		91.4
(1.9)
A 		95.1
(2.6)
A 		97.3
(3)
A 		33
C 60.9
(-3)
A 		113.4
(3)
A 		61.2
(-3)
A 		92.3
(0.6)
A 		53
avr 71.2
(-3) 		108.3
(2.1) 		90.1
(-0.4) 		115.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 91.4
(0.8)
A 		95.4
(1.3)
A 		60.8
(-3)
A 		109.1
(3)
A 		89.9
(0.6)
A 		100.6
(1.9)
A 		48
B 58
(-3)
A 		71.4
(-1)
A 		99.1
(3)
A 		77.1
(-0.2)
A 		77.9
(-0.1)
A 		74.8
(-0.5)
A 		41
C 72.2
(-3)
A 		92.5
(-1)
A 		101
(-0.2)
A 		134
(3)
A 		101
(-0.2)
A 		80.6
(-2.2)
A 		62
avr 73.9
(-3) 		86.4
(-0.7) 		87
(-0.6) 		106.7
(3) 		89.6
(-0.1) 		85.3
(-0.9) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 32.1
(3)
A 		26
(-1)
A 		29.8
(1.5)
A 		22.9
(-3)
A 		9
B 20.6
(-3)
A 		22.6
(3)
A 		22
(1.2)
A 		20.7
(-2.7)
A 		2
C 20.2
(-1.4)
A 		32.6
(3)
A 		21.3
(-1)
A 		15.6
(-3)
A 		17
avr 24.3
(0.7) 		27.1
(3) 		24.4
(0.8) 		19.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 16.8
(-2)
A 		33.9
(3)
A 		13.2
(-3)
A 		27.7
(1.2)
A 		27.1
(1)
A 		24.5
(0.3)
A 		21
B 20.2
(-3)
A 		23.8
(-1.1)
A 		24.1
(-1)
A 		20.4
(-2.9)
A 		31.7
(3)
A 		27.9
(1)
A 		12
C 26.7
(-2.1)
A 		28.2
(-0.9)
A 		25.7
(-3)
A 		26.9
(-2)
A 		32.7
(3)
A 		27
(-1.9)
A 		7
avr 21.2
(-2.9) 		28.6
(1.8) 		21
(-3) 		25
(-0.5) 		30.5
(3) 		26.5
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189190_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2745
Sequence Type Exemplar sequence
Representative Public ID R03D7.2 NCBI
Target Description R03D7.2 /REP_DB=WormBase Gene ID /WP=CE01610 /TR=Q09594 /GB=CAA86856.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=helicase domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063953(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063953 NCBI Caenorhabditis elegans R03D7.2 (R03D7.2) mRNA, complete cds. 11/11 None
SNAP00000040566 ENSEMBL cdna:SNAP chromosome:CEL140:II:10932930:10934353:-1 11/11 None
GENEFINDER00000040578 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10932930:10934646:-1 11/11 None
R03D7.2 ENSEMBL cdna:known chromosome:CEL140:II:10932699:10935051:-1 gene:R03D7.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040577 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title helicase domain
Ensembl R03D7.2
Entrez Gene 174682 Entrez gene
SwissProt Q09594 EMBL-EBI
WormBase CE01610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86856 Hypothetical protein R03D7.2 [Caenorhabditis elegans] ref|NP_496354.1| R03D7.2 [Caenorhabditis elegans] 0.0
blast AAA98031 Hypothetical protein K08D10.5 [Caenorhabditis elegans] ref|NP_500503.1| K08D10.5 [Caenorhabditis elegans] 1.0E-147
blast AAA98031 Hypothetical protein K08D10.5 [Caenorhabditis elegans] ref|NP_500503.1| K08D10.5 [Caenorhabditis elegans] 1.0E-141
blast AAA98031 Hypothetical protein K08D10.5 [Caenorhabditis elegans] ref|NP_500503.1| K08D10.5 [Caenorhabditis elegans] 1.0E-136
blast CAE56861 Hypothetical protein CBG24691 [Caenorhabditis briggsae] 9.0E-38
blast CAE56861 Hypothetical protein CBG24691 [Caenorhabditis briggsae] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:189190_S_AT
tagatatgcgctccaactggtcgaagcactcactcgatacgcgagcacggcgaataagaa
gatcaccgccgccattctaaacttctatggagctcaatactcctacgtgtactccatggc
cgaagacgaagtgaccgtcaacaccatcgacggatgtcaaggacaggaatatgacgtcac
aatcgtgcttctcacaagatccgatccttatgagcgatcaaaattcctggtcaatgccaa
caggatcaacgtcgcgctgagccgcccgaagatcgccacagtcatcattggtcaacgcca
cctgacaggaaatcaaccggacccaagacagccgaaacgcggaagacatcagcgagtttg
caactgggcccgtctcatcgagaagcttccaaaggaatgtttcgtcgacgccaaagatca
agtcatcgctcaggaagatcggtcagaagtcagtcacgcattggatcctacgcgttcatt
gttaccagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATATGCGCTCCAACTGGTCGAA 534 653 1083 Antisense
TGGTCGAAGCACTCACTCGATACGC 558 551 1100 Antisense
CCGCCGCCATTCTAAACTTCTATGG 659 261 1148 Antisense
GAGCTCAATACTCCTACGTGTACTC 34 389 1172 Antisense
GTGTACTCCATGGCCGAAGACGAAG 589 485 1189 Antisense
CGAAGTGACCGTCAACACCATCGAC 351 249 1209 Antisense
ATGACGTCACAATCGTGCTTCTCAC 608 45 1253 Antisense
TGCCAACAGGATCAACGTCGCGCTG 301 587 1317 Antisense
AGATCGCCACAGTCATCATTGGTCA 439 67 1352 Antisense
GGAAATCAACCGGACCCAAGACAGC 155 527 1390 Antisense
TCCTACGCGTTCATTGTTACCAGCC 541 591 1548 Antisense
Sequence Source Affymetrix Proprietary Database