[Home] | [Total List]

[189185_at]

Description C05E4.14 /REP_DB=WormBase Gene ID /WP=CE24788 /GEN=srh-2 /GB=AAK72080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 67      4grp_total > 31      6grp_cgc > 47      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 44.5
(3)
A 		4.1
(-3)
A 		24.5
(0)
A 		3.9
(-3)
A 		41
B 51.9
(3)
A 		4.2
(-2.7)
A 		1.6
(-3)
A 		3.4
(-2.8)
A 		50
C 4.3
(-3)
A 		8.1
(-2.4)
A 		6.3
(-2.7)
A 		40.2
(3)
A 		36
avr 33.6
(3) 		5.5
(-3) 		10.8
(-1.9) 		15.8
(-0.8) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 21.2
(-3)
A 		68.5
(-1.6)
A 		84.8
(-1.1)
A 		76.7
(-1.3)
P 		58.2
(-1.9)
M 		220.2
(3)
P 		199
B 63.2
(-2.3)
A 		40.6
(-3)
A 		101.7
(-1.2)
A 		115.2
(-0.8)
P 		79.5
(-1.9)
P 		247.7
(3)
P 		207
C 91.5
(-1.6)
A 		58.4
(-2.5)
A 		67.3
(-2.3)
A 		79.3
(-1.9)
A 		40
(-3)
A 		261.8
(3)
P 		222
avr 58.6
(-2.9) 		55.8
(-3) 		84.6
(-2.1) 		90.4
(-1.9) 		59.2
(-2.9) 		243.2
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.2
(3)
A 		0.9
(-2.9)
A 		6.4
(-0.8)
A 		0.6
(-3)
A 		16
B 16.6
(3)
A 		1
(-2.8)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		16
C 1.4
(-3)
A 		2.3
(-2)
A 		2.2
(-2.1)
A 		6.8
(3)
A 		5
avr 11.4
(3) 		1.4
(-3) 		3
(-2) 		2.7
(-2.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 3.9
(-3)
A 		24.4
(-0.5)
A 		18.5
(-1.2)
A 		19.5
(-1.1)
P 		17.6
(-1.3)
M 		53.6
(3)
P 		50
B 22
(-2.4)
A 		13.5
(-3)
A 		24.7
(-2.1)
A 		30.5
(-1.7)
P 		32.3
(-1.6)
P 		92.4
(3)
P 		79
C 33.9
(-1.3)
A 		17.8
(-2.6)
A 		17.1
(-2.7)
A 		16
(-2.8)
A 		13
(-3)
A 		87.6
(3)
P 		75
avr 19.9
(-2.9) 		18.6
(-3) 		20.1
(-2.8) 		22
(-2.7) 		21
(-2.8) 		77.9
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15681
Sequence Type Exemplar sequence
Representative Public ID C05E4.14 NCBI
Target Description C05E4.14 /REP_DB=WormBase Gene ID /WP=CE24788 /GEN=srh-2 /GB=AAK72080.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026194(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026194 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-2) (srh-2) mRNA, complete cds. 10/11 None
C05E4.14b ENSEMBL cdna:known chromosome:CEL140:V:732376:734109:1 gene:C05E4.14 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026193 7/11 Cross Hyb Matching Probes None
SNAP00000009756 7/11 Cross Hyb Matching Probes None
C05E4.14a 7/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178584 2 1 NM_001026194 189185_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:732375-734109(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05E4.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88411 Serpentine receptor, class h protein 2, isoform b [Caenorhabditis elegans] ref|NP_001021365.1| Serpentine Receptor, class H family member (srh-2) [Caenorhabditis elegans] 1.0E-171
blast AAK72080 Serpentine receptor, class h protein 2, isoform a [Caenorhabditis elegans] ref|NP_001021364.1| Serpentine Receptor, class H family member (srh-2) [Caenorhabditis elegans] 1.0E-69
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 5.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021365.1 7 15-37,50-69,93-115,136-155,194-216,237-259,282-304
C05E4.14b 7 15-37,50-69,93-115,136-155,194-216,237-259,282-304
Sequence
Target Sequence 
>C. ELEGANS:189185_AT
tgcatattcatattcctctaccgaatggaggtagccagcaagcatacggcaccaactatg
ttgtacaaaatcacacattttcaaacgtatcttttgtattttttgctagtgatgttatct
ggaataactgtttttatgtatccagttttgaaggaacaactggattataaacaaagactg
gaaatgaaagtcggaccgattccaacatttatgctgtgcgatagctgtgtctttatgatt
tacgactctcctatattcctaatttggttccttgtagcgtacatctgcatagcgctggct
tacataatattgtttagctccgggattgtgacctacaaagctttgaaagtgagccgagca
tctgcagccgttagaaaaattcagaagaacattttcatgagcctggtggtgtcgacaatt
actcaccttggcctactatttataccactggctacatttttcatgctctccctacttgtg
cccgaatggagcaacactagtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATATTCATATTCCTCTACCGAA 440 579 331 Antisense
GGTAGCCAGCAAGCATACGGCACCA 342 503 360 Antisense
ATCACACATTTTCAAACGTATCTTT 679 27 400 Antisense
GAAAGTCGGACCGATTCCAACATTT 663 359 516 Antisense
GATTCCAACATTTATGCTGTGCGAT 611 433 528 Antisense
GTGCGATAGCTGTGTCTTTATGATT 154 479 546 Antisense
TGATTTACGACTCTCCTATATTCCT 141 563 566 Antisense
CTATATTCCTAATTTGGTTCCTTGT 180 223 581 Antisense
TGGTTCCTTGTAGCGTACATCTGCA 527 549 595 Antisense
GTACATCTGCATAGCGCTGGCTTAC 690 459 609 Antisense
GCCCGAATGGAGCAACACTAGTGAT 438 285 810 Antisense
Sequence Source Affymetrix Proprietary Database