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[189182_at] synaptobrevin

Description B0361.10 /REP_DB=WormBase Gene ID /WP=CE20451 /TR=Q9TXZ9 /GB=AAK18869.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=synaptobrevin
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 60      4grp_high_8_8 > 27      6grp_highest_nonorm > 74      6grp_total > 33      4grp_total > 37      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 662.3
(2.8)
P 		588.4
(-0)
P 		510.9
(-3)
P 		667.2
(3)
P 		156
B 552.3
(-2.6)
P 		573.4
(-1.8)
P 		539.8
(-3)
P 		708.4
(3)
P 		169
C 785.2
(3)
P 		767.6
(2.6)
P 		721.9
(1.6)
P 		517
(-3)
P 		268
avr 666.6
(3) 		643.1
(1.1) 		590.9
(-3) 		630.9
(0.2) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 740.7
(1.2)
P 		606.4
(-1.1)
P 		847
(3)
P 		499.6
(-3)
P 		525.3
(-2.5)
P 		498.5
(-3)
P 		349
B 815.9
(2.3)
P 		747.4
(0.4)
P 		838.8
(3)
P 		683.4
(-1.5)
P 		631.8
(-3)
P 		712.3
(-0.7)
P 		207
C 765.1
(3)
P 		609.1
(-0.9)
P 		619.4
(-0.7)
P 		692.5
(1.2)
P 		527.9
(-3)
P 		652.9
(0.2)
P 		237
avr 773.9
(3) 		654.3
(-0.4) 		768.4
(2.8) 		625.2
(-1.2) 		561.7
(-3) 		621.2
(-1.3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 241.1
(3)
P 		127.7
(-1.7)
P 		133.6
(-1.5)
P 		97.7
(-3)
P 		143
B 176.1
(3)
P 		141.6
(-1.1)
P 		125.1
(-3)
P 		150.9
(0)
P 		51
C 259.9
(3)
P 		220.7
(1.6)
P 		251.6
(2.7)
P 		87.2
(-3)
P 		173
avr 225.7
(3) 		163.3
(-0.3) 		170.1
(0.1) 		111.9
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 136.5
(-2)
P 		215.7
(3)
P 		184.5
(1)
P 		126.7
(-2.7)
P 		158.5
(-0.6)
P 		121.4
(-3)
P 		94
B 283.9
(3)
P 		248.8
(1)
P 		203.7
(-1.7)
P 		181
(-3)
P 		256.7
(1.4)
P 		265.6
(1.9)
P 		103
C 283.6
(3)
P 		185.9
(-1.1)
P 		157.7
(-2.2)
P 		139.3
(-3)
P 		170.8
(-1.7)
P 		218.6
(0.3)
P 		144
avr 234.7
(3) 		216.8
(1.7) 		182
(-0.7) 		149
(-3) 		195.3
(0.2) 		201.9
(0.7) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189182_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6210
Sequence Type Exemplar sequence
Representative Public ID B0361.10 NCBI
Target Description B0361.10 /REP_DB=WormBase Gene ID /WP=CE20451 /TR=Q9TXZ9 /GB=AAK18869.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=synaptobrevin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066204 NCBI Caenorhabditis elegans B0361.10 (synaptobrevin) mRNA, complete cds. 11/11 None
SNAP00000011051 ENSEMBL cdna:SNAP chromosome:CEL140:III:7286441:7287520:-1 11/11 None
GENEFINDER00000011067 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7286441:7287520:-1 11/11 None
B0361.10 ENSEMBL cdna:known chromosome:CEL140:III:7285919:7287525:-1 gene:B0361.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7286438-7287518(-) 100.0 100.0
Public Domain and Genome References
Gene Title synaptobrevin
Ensembl B0361.10
Entrez Gene 176031 Entrez gene
SwissProt Q9TXZ9 EMBL-EBI
WormBase CE20451 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247852_AT SNARE protein-related at
DROSOPHILA_2:1640976_AT dm
DROSGENOME1:154675_AT dm
CHICKEN:GGAAFFX.8342.1.S1_AT similar to SNARE protein Ykt6; YKT6, S. cerevisiae, homolog of gga
HG-U133_PLUS_2:217785_S_AT SNARE protein Ykt6 hs
HG-FOCUS:217785_S_AT SNARE protein Ykt6 hs
HG-U133A:217785_S_AT SNARE protein Ykt6 hs
HG-U133A_2:217785_S_AT SNARE protein Ykt6 hs
HG-U133_PLUS_2:217784_AT SNARE protein Ykt6 hs
HG-U133A:217784_AT SNARE protein Ykt6 hs
HG-U133A_2:217784_AT SNARE protein Ykt6 hs
HU35KSUBB:RC_R44957_AT SNARE protein Ykt6 hs
U133_X3P:G5730119_3P_A_AT SNARE protein Ykt6 hs
U133_X3P:HS.296244.0.S2_3P_X_AT SNARE protein Ykt6 hs
U133_X3P:HS.296244.0.S2_3P_AT SNARE protein Ykt6 hs
HG-U95AV2:41516_AT SNARE protein Ykt6 hs
HG-U95AV2:41517_G_AT SNARE protein Ykt6 hs
HG-U95B:45313_AT SNARE protein Ykt6 hs
MG-U74AV2:104400_AT RIKEN cDNA 0610042I15 gene mm
MG-U74BV2:106581_AT RIKEN cDNA 0610042I15 gene mm
MOE430A:1460191_AT RIKEN cDNA 0610042I15 gene mm
MOUSE430A_2:1460191_AT RIKEN cDNA 0610042I15 gene mm
MOUSE430_2:1460191_AT RIKEN cDNA 0610042I15 gene mm
MOE430A:1448464_AT RIKEN cDNA 0610042I15 gene mm
MOUSE430A_2:1448464_AT RIKEN cDNA 0610042I15 gene mm
MOUSE430_2:1448464_AT RIKEN cDNA 0610042I15 gene mm
MU19KSUBA:TC14885_AT RIKEN cDNA 0610042I15 gene, mRNA (cDNA clone MGC:5770 IMAGE:3257673) mm
MU19KSUBA:TC14885_G_AT RIKEN cDNA 0610042I15 gene, mRNA (cDNA clone MGC:5770 IMAGE:3257673) mm
MU19KSUBA:TC14886_AT RIKEN cDNA 0610042I15 gene, mRNA (cDNA clone MGC:5770 IMAGE:3257673) mm
YEAST_2:1778383_AT Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and within the Golgi, endocytic trafficking to the vacuole, and vacuolar fusion; membrane localization due to prenylation at the carboxy-terminus Sc
Protein Similarities
Method ID Description E-Value
blast AAK18869 Hypothetical protein B0361.10 [Caenorhabditis elegans] ref|NP_498605.1| B0361.10 [Caenorhabditis elegans] 1.0E-112
blast E88504 protein B0361.8 [imported] - Caenorhabditis elegans 1.0E-112
blast CAE69292 Hypothetical protein CBG15347 [Caenorhabditis briggsae] 8.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001388 EMBL-EBI Synaptobrevin 1.4E-13
Sequence
Target Sequence 
>C. ELEGANS:189182_AT
aatgtgatctctcttcattcagcttctttcaacgtggatccgttcaagaattcatgacgt
ttacagcaaaacttcttgttgagagaagtggattgggagctagaagttctgttaaagaaa
acgaatatcttgttcattgctatgttcgaaatgatggcctctcagccgtatgcgtaaccg
atgctgaatatcaacaacgtgtggcaatgagcttcctcggaagagttctcgatgatttca
ccacaagagttccagcaactcaatggcctggaatccgaagcgacaaggattgttcataca
caggtttgaaggatcttctcgaaaaatggcaaaatccacgtgaagccgatccaatgactc
gagttcaagaagaagtagaagagacgaaaatggtgatgcataatacgattcaatcggtgc
ttgatcgtggtgagaagctggatgatttagtgaaaaagagtgagaacctgtcggatcaat
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTGATCTCTCTTCATTCAGCTT 660 163 83 Antisense
ATTCAGCTTCTTTCAACGTGGATCC 82 13 99 Antisense
TGTTCGAAATGATGGCCTCTCAGCC 354 563 225 Antisense
TCTCAGCCGTATGCGTAACCGATGC 78 613 242 Antisense
CAACGTGTGGCAATGAGCTTCCTCG 582 187 277 Antisense
GATTTCACCACAAGAGTTCCAGCAA 138 429 316 Antisense
AGCAACTCAATGGCCTGGAATCCGA 453 75 336 Antisense
GGCAAAATCCACGTGAAGCCGATCC 555 533 410 Antisense
GAAGCCGATCCAATGACTCGAGTTC 233 345 424 Antisense
CAATCGGTGCTTGATCGTGGTGAGA 406 181 493 Antisense
GAGTGAGAACCTGTCGGATCAATCA 479 401 540 Antisense
Sequence Source Affymetrix Proprietary Database