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[189181_s_at]

Description R07H5.6 /REP_DB=WormBase Gene ID /WP=CE12560 /TR=Q93933 /GB=CAB03229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tc5 transposase
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 11.8
(-3)
A 		50.3
(-0.9)
A 		15.5
(-2.8)
A 		120.3
(3)
A 		109
B 52.7
(3)
A 		16.6
(-1.5)
A 		4.6
(-3)
A 		45.3
(2.1)
A 		48
C 33.5
(-2.2)
A 		87.5
(-0.2)
A 		10
(-3)
A 		177
(3)
P 		167
avr 32.7
(-1.7) 		51.5
(-0.6) 		10
(-3) 		114.2
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 18.4
(-3)
A 		54.8
(1.9)
A 		38.8
(-0.2)
A 		49.5
(1.2)
A 		52.6
(1.6)
A 		62.9
(3)
A 		45
B 33.1
(-0.3)
A 		60.7
(3)
A 		11.2
(-3)
A 		49.3
(1.6)
A 		25.8
(-1.2)
A 		56.9
(2.5)
A 		50
C 14.4
(-2)
A 		63.9
(2.3)
A 		71.7
(3)
A 		3.6
(-3)
A 		38.4
(0.1)
A 		14.5
(-2)
A 		68
avr 22
(-3) 		59.8
(3) 		40.6
(-0) 		34.1
(-1.1) 		38.9
(-0.3) 		44.8
(0.6) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 4.3
(-2.9)
A 		10.9
(0)
A 		4.1
(-3)
A 		17.6
(3)
A 		14
B 16.8
(3)
A 		4.1
(-1.9)
A 		1.1
(-3)
A 		9.7
(0.3)
A 		16
C 11.1
(-1.3)
A 		25.2
(2)
A 		3.5
(-3)
A 		29.8
(3)
P 		26
avr 10.7
(-0.1) 		13.4
(0.9) 		2.9
(-3) 		19
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.4
(-3)
A 		19.5
(3)
A 		8.4
(-1.1)
A 		12.5
(0.4)
A 		15.9
(1.7)
A 		15.3
(1.4)
A 		16
B 11.5
(-0.1)
A 		20.2
(2.7)
A 		2.7
(-3)
A 		13.1
(0.4)
A 		10.5
(-0.5)
A 		21.2
(3)
A 		19
C 5.3
(-1.5)
A 		19.5
(3)
A 		18.2
(2.6)
A 		0.7
(-3)
A 		12.4
(0.7)
A 		4.8
(-1.7)
A 		19
avr 6.7
(-3) 		19.7
(3) 		9.8
(-1.6) 		8.8
(-2) 		12.9
(-0.1) 		13.8
(0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189181_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9824
Sequence Type Exemplar sequence
Representative Public ID R07H5.6 NCBI
Target Description R07H5.6 /REP_DB=WormBase Gene ID /WP=CE12560 /TR=Q93933 /GB=CAB03229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tc5 transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069548 NCBI Caenorhabditis elegans T07G12.7 (T07G12.7) mRNA, complete cds. 11/11 A 
SNAP00000026260 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10549187:10551099:1 11/11 None
GENEFINDER00000026267 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10549187:10551099:1 11/11 None
SNAP00000030262 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11189963:11190979:-1 11/11 None
GENEFINDER00000030269 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11189688:11191045:-1 11/11 None
T07G12.7 ENSEMBL cdna:known chromosome:CEL140:IV:10549187:10551099:1 gene:T07G12.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001201 3/11 Cross Hyb Matching Probes None
GENEFINDER00000001220 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl T07G12.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501949 T07G12.7 [Caenorhabditis elegans] 0.0
blast T24039 hypothetical protein R07H5.6 - Caenorhabditis elegans 0.0
blast AAB94140 Hypothetical protein M116.3 [Caenorhabditis elegans] ref|NP_501429.2| M116.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.1.Centromere-binding All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Centromere-binding 0.219999998807907
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.0E-126
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 1.1E-34
Pfam IPR004875 EMBL-EBI CENP-B protein 8.5E-77
Pfam IPR004906 EMBL-EBI Tc5 transposase 1.3E-89
Pfam IPR004906 EMBL-EBI Tc5 transposase 3.9E-59
Pfam IPR007350 EMBL-EBI Tc5 transposase, C-terminal 1.1E-34
Pfam IPR004875 EMBL-EBI CENP-B protein 8.5E-77
Pfam IPR004906 EMBL-EBI Tc5 transposase 2.2E-39
Pfam IPR004875 EMBL-EBI CENP-B protein 3.1E-61
Pfam IPR004906 EMBL-EBI Tc5 transposase 2.2E-39
Pfam IPR004875 EMBL-EBI CENP-B protein 3.1E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030269 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189181_S_AT
aagatgccttatctcactcgtataccattctcccaatgttgagtgtgacgggaaagctcg
ctccaaaactctacatcgttttgcaggaaaaaggaggcaagtttcccaaaaaaggtcact
gttctccgtccaacctcatcgttcgtgccaactccagtcacattatgaccaaagatttaa
tgagagattgggttgaaagtgcagtgtgcgatcctgcgatgccgaaggaaaccgttcttc
tccttgactcatggccagcatggaaaaatgaaagggacgtacaagacgctgcgctatatg
gacacacggtccacgttcgtacgattccacctggagcgacttctttcattcaaccttgtg
acatctacctcttctgcccaatgaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATGCCTTATCTCACTCGTATAC 383 155 830 Antisense
TCGTATACCATTCTCCCAATGTTGA 557 603 847 Antisense
GACGGGAAAGCTCGCTCCAAAACTC 393 375 876 Antisense
TTCGTGCCAACTCCAGTCACATTAT 14 695 971 Antisense
AGTGCAGTGTGCGATCCTGCGATGC 33 61 1027 Antisense
CTCCTTGACTCATGGCCAGCATGGA 451 235 1069 Antisense
AAGGGACGTACAAGACGCTGCGCTA 11 159 1101 Antisense
CGCTGCGCTATATGGACACACGGTC 549 253 1116 Antisense
TTCGTACGATTCCACCTGGAGCGAC 700 683 1145 Antisense
GACTTCTTTCATTCAACCTTGTGAC 647 371 1167 Antisense
TCTACCTCTTCTGCCCAATGAAAAA 250 615 1193 Antisense
Sequence Source Affymetrix Proprietary Database