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[189180_at]

Description R07H5.6 /REP_DB=WormBase Gene ID /WP=CE12560 /TR=Q93933 /GB=CAB03229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tc5 transposase
Cluster 6grp_total > 02      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 61.8
(-0.6)
A 		43.6
(-1.7)
A 		21.5
(-3)
A 		124.3
(3)
P 		103
B 62.3
(1.7)
A 		28.4
(-3)
A 		48.8
(-0.2)
A 		71.4
(3)
A 		43
C 23.5
(-2.4)
A 		5.7
(-3)
A 		36
(-2)
A 		188
(3)
P 		182
avr 49.2
(-1.6) 		25.9
(-3) 		35.4
(-2.4) 		127.9
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 69.6
(2.1)
A 		76.3
(3)
A 		66.5
(1.7)
A 		30.5
(-3)
A 		46.2
(-0.9)
A 		48.2
(-0.7)
A 		46
B 52.2
(1.4)
A 		69.4
(3)
A 		6.5
(-3)
A 		55.2
(1.6)
A 		40.7
(0.3)
A 		16.9
(-2)
A 		63
C 40
(-0.7)
A 		83.9
(2.3)
A 		38.1
(-0.9)
A 		94.6
(3)
A 		7.1
(-3)
A 		37.7
(-0.9)
A 		88
avr 53.9
(-0) 		76.5
(3) 		37
(-2.2) 		60.1
(0.8) 		31.3
(-3) 		34.3
(-2.6) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 22.5
(3)
A 		9.5
(-1.6)
A 		5.6
(-3)
A 		18.2
(1.5)
P 		17
B 19.9
(3)
A 		7
(-3)
A 		11.3
(-1)
A 		15.2
(0.8)
A 		13
C 7.8
(-1.8)
A 		1.6
(-3)
A 		12.6
(-0.8)
A 		31.7
(3)
P 		30
avr 16.7
(1.1) 		6
(-3) 		9.8
(-1.5) 		21.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.8
(-1.4)
A 		27.1
(3)
A 		14.5
(-0.9)
A 		7.7
(-3)
A 		14
(-1.1)
A 		11.7
(-1.8)
A 		19
B 18.2
(1.6)
A 		23.1
(3)
A 		1.6
(-3)
A 		14.6
(0.6)
A 		16.5
(1.2)
A 		6.3
(-1.7)
A 		22
C 14.8
(0.2)
A 		25.6
(3)
A 		9.7
(-1.1)
A 		19
(1.3)
A 		2.3
(-3)
A 		12.6
(-0.3)
A 		23
avr 15.3
(-0.6) 		25.3
(3) 		8.6
(-3) 		13.8
(-1.1) 		10.9
(-2.2) 		10.2
(-2.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9824
Sequence Type Exemplar sequence
Representative Public ID R07H5.6 NCBI
Target Description R07H5.6 /REP_DB=WormBase Gene ID /WP=CE12560 /TR=Q93933 /GB=CAB03229.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tc5 transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030269 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11189688:11191045:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030262 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T24039 hypothetical protein R07H5.6 - Caenorhabditis elegans 1.0E-167
blast NP_501949 T07G12.7 [Caenorhabditis elegans] 1.0E-136
blast AAB94140 Hypothetical protein M116.3 [Caenorhabditis elegans] ref|NP_501429.2| M116.3 [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR004906 EMBL-EBI Tc5 transposase 2.2E-39
Pfam IPR004875 EMBL-EBI CENP-B protein 3.1E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000030269 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:189180_AT
tcaaactggggaaagccgtcctgggctcaattttgctccaaacttagtgccgttttctgc
tccaccgtggggcaaaatatttctacgtgattatatctttcacttcaaaagccgcaaaac
gttgtgttgtggcattgaatatgaatatgctatttgtctgtgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACTGGGGAAAGCCGTCCTGGG 530 627 1254 Antisense
GAAAGCCGTCCTGGGCTCAATTTTG 148 359 1264 Antisense
TCCTGGGCTCAATTTTGCTCCAAAC 91 595 1272 Antisense
ATTTTGCTCCAAACTTAGTGCCGTT 137 15 1283 Antisense
CCAAACTTAGTGCCGTTTTCTGCTC 417 275 1291 Antisense
TTTCTGCTCCACCGTGGGGCAAAAT 225 667 1307 Antisense
GTGGGGCAAAATATTTCTACGTGAT 230 485 1320 Antisense
CTACGTGATTATATCTTTCACTTCA 262 225 1336 Antisense
TTTCACTTCAAAAGCCGCAAAACGT 567 667 1351 Antisense
GCCGCAAAACGTTGTGTTGTGGCAT 568 285 1364 Antisense
TGAATATGCTATTTGTCTGTGTGGA 80 575 1395 Antisense
Sequence Source Affymetrix Proprietary Database