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[189179_at] histone H1 like

Description C30G7.1 /REP_DB=WormBase Gene ID /WP=CE08476 /TR=Q18336 /GB=CAB01632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone H1 like
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      6grp_highest_nonorm > 99      6grp_total > 86      4grp_total > 03      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4485
1 2 3 4 range
A 526.8
(-2.4)
P 		168
(-2.9)
A 		86.4
(-3)
A 		4529.3
(3)
P 		4443
B 488.9
(-2.2)
P 		129.8
(-2.9)
A 		44
(-3)
M 		3517.9
(3)
P 		3474
C 591.4
(-2.3)
P 		157.9
(-2.9)
P 		93.7
(-3)
A 		4316.3
(3)
P 		4223
avr 535.7
(-2.3) 		151.9
(-2.9) 		74.7
(-3) 		4121.2
(3) 		4047

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3092
1 2 3 4 5 6 range
A 289.8
(-3)
P 		312.5
(-3)
P 		836.6
(-1.9)
P 		1069.5
(-1.5)
P 		1565.2
(-0.5)
P 		3367.4
(3)
P 		3078
B 275.3
(-3)
P 		287.8
(-3)
P 		789.2
(-1.8)
P 		1143.8
(-1)
P 		1372.7
(-0.5)
P 		2907.8
(3)
P 		2633
C 427.2
(-2.7)
P 		308.6
(-3)
P 		758
(-1.9)
P 		1215
(-0.8)
P 		1374.6
(-0.4)
P 		2812.7
(3)
P 		2504
avr 330.8
(-2.9) 		303
(-3) 		794.6
(-1.9) 		1142.8
(-1.2) 		1437.5
(-0.5) 		3029.3
(3) 		2726
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 191.8
(-1.4)
P 		36.5
(-2.9)
A 		22.6
(-3)
A 		663
(3)
P 		640
B 155.9
(-1.8)
P 		32
(-2.8)
A 		10.2
(-3)
M 		749.7
(3)
P 		740
C 195.8
(-1.6)
P 		45.4
(-2.9)
P 		32.7
(-3)
A 		727.8
(3)
P 		695
avr 181.2
(-1.6) 		38
(-2.9) 		21.8
(-3) 		713.5
(3) 		692

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1031
1 2 3 4 5 6 range
A 53.4
(-3)
P 		111.1
(-2.5)
P 		182.2
(-2)
P 		271.2
(-1.3)
P 		472.3
(0.3)
P 		819.8
(3)
P 		766
B 95.8
(-3)
P 		95.8
(-3)
P 		191.6
(-2.4)
P 		303
(-1.7)
P 		557.7
(-0.2)
P 		1084.3
(3)
P 		989
C 158.3
(-2.5)
P 		94.2
(-3)
P 		192.9
(-2.3)
P 		244.3
(-1.9)
P 		444.8
(-0.5)
P 		941.6
(3)
P 		847
avr 102.5
(-3) 		100.4
(-3) 		188.9
(-2.4) 		272.8
(-1.8) 		491.6
(-0.2) 		948.6
(3) 		848
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13074
Sequence Type Exemplar sequence
Representative Public ID C30G7.1 NCBI
Target Description C30G7.1 /REP_DB=WormBase Gene ID /WP=CE08476 /TR=Q18336 /GB=CAB01632.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histone H1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074279 NCBI Caenorhabditis elegans HIstone H1 Like family member (hil-1) (hil-1) mRNA, complete cds. 11/11 None
SNAP00000006477 ENSEMBL cdna:SNAP chromosome:CEL140:V:14952391:14955202:1 11/11 None
GENEFINDER00000006481 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14952391:14955202:1 11/11 None
C30G7.1 ENSEMBL cdna:known chromosome:CEL140:V:14952364:14955337:1 gene:C30G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14952390-14955202(+) 100.0 100.0
Public Domain and Genome References
Gene Title histone H1 like
Gene Symbol hil-1
Ensembl C30G7.1
Entrez Gene 179993 Entrez gene
SwissProt Q18336 EMBL-EBI
WormBase CE08476 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01632 Hypothetical protein C30G7.1 [Caenorhabditis elegans] ref|NP_506680.1| HIstone H1 Like family member (hil-1) [Caenorhabditis elegans] sp|Q18336|H1X_CAEEL Histone H1.X (Histone H1-like protein 1) gb|AAB60893.1| histone H1-like protein [Caenorhabditis elegans] 1.0E-129
blast CAB01632 Hypothetical protein C30G7.1 [Caenorhabditis elegans] ref|NP_506680.1| HIstone H1 Like family member (hil-1) [Caenorhabditis elegans] sp|Q18336|H1X_CAEEL Histone H1.X (Histone H1-like protein 1) gb|AAB60893.1| histone H1-like protein [Caenorhabditis elegans] 1.0E-127
blast CAE66351 Hypothetical protein CBG11603 [Caenorhabditis briggsae] 3.0E-81
blast CAE66351 Hypothetical protein CBG11603 [Caenorhabditis briggsae] 5.0E-80
blast AAH29046 H1 histone family, member 0 [Homo sapiens] 1.0E-17
Protein Domains
Database ID Description E-Value
scop a.4.5.Histone H1/H5 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Histone H1/H5 3.00000005862444E-25
Pfam IPR005818 EMBL-EBI Histone H1/H5 1.9E-28
Sequence
Target Sequence 
>C. ELEGANS:189179_AT
ttcttctgggtcatccacatcatgaacgagctcaacatcatcccagctacatggatatga
tcaagggagcaattcaagcaatcgacaatggaaccggaagcagcaaggcggcaattctca
agtatattgctcaaaactatcatgttggagagaatcttccaaaggtgaacaatcatctcc
gcagtgtcctcaaaaaggccgtcgactctggtgacattgaacagactcgcggacatggtg
ccaccggaagtttccgcatgggaaaagaatgcgagaagaacttgcaagttggaattccgg
ttcagaccaaaccaatgctaatgctcaaagaagttcgtcagaagctggagaatatctcga
aggctgaaaaaaccaaaccatctaccagctccatgtccaccaataagaagggaaaaccaa
tttcaacaatgaaaaagcgtggagttatgagcaagaaacgttcctcaaagaacaaaatgg
ctccaaaggccaaaagccacgggctcaaaaagaagggaccagccacgaagagctctggat
tggtgcacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCTGGGTCATCCACATCATGA 191 691 83 Antisense
TGAACGAGCTCAACATCATCCCAGC 693 573 105 Antisense
GCAGCAAGGCGGCAATTCTCAAGTA 380 311 182 Antisense
AAAGGTGAACAATCATCTCCGCAGT 558 117 243 Antisense
ATCTCCGCAGTGTCCTCAAAAAGGC 205 29 257 Antisense
CAAAAAGGCCGTCGACTCTGGTGAC 559 189 273 Antisense
TGAACAGACTCGCGGACATGGTGCC 267 573 300 Antisense
TGCCACCGGAAGTTTCCGCATGGGA 340 587 321 Antisense
CAGCTCCATGTCCACCAATAAGAAG 497 203 468 Antisense
AGAAGGGACCAGCCACGAAGAGCTC 367 75 593 Antisense
GAAGAGCTCTGGATTGGTGCACAAG 133 339 609 Antisense
Sequence Source Affymetrix Proprietary Database