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[189178_at] arginine kinase

Description F44G3.2 /REP_DB=WormBase Gene ID /WP=CE16034 /TR=O45518 /GB=CAB05517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=arginine kinase
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_high_8_8 > 63      6grp_highest_nonorm > 26      6grp_total > 20      4grp_total > 48      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 93.9
(-0.5)
P 		63.5
(-3)
P 		136.1
(3)
P 		101.6
(0.1)
P 		73
B 79.8
(0.6)
A 		98
(2.3)
P 		105.4
(3)
P 		41.4
(-3)
M 		64
C 70.9
(0.1)
P 		22.6
(-3)
A 		116.3
(3)
P 		38.4
(-2)
P 		94
avr 81.5
(-0.9) 		61.4
(-2.9) 		119.3
(3) 		60.5
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5230
1 2 3 4 5 6 range
A 4150.3
(-2.3)
P 		6496
(0.6)
P 		8413.5
(3)
P 		5359
(-0.8)
P 		4249.1
(-2.2)
P 		3605.1
(-3)
P 		4808
B 3728
(-3)
P 		6725.4
(1)
P 		8218.8
(3)
P 		5436
(-0.7)
P 		4765
(-1.6)
P 		4202.8
(-2.4)
P 		4491
C 3183.8
(-3)
P 		7469.6
(2.5)
P 		7877.1
(3)
P 		5371.3
(-0.2)
P 		3965.3
(-2)
P 		4447.3
(-1.4)
P 		4693
avr 3687.4
(-3) 		6897
(1.3) 		8169.8
(3) 		5388.8
(-0.7) 		4326.5
(-2.1) 		4085.1
(-2.5) 		4482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 34.2
(2.6)
P 		13.8
(-3)
P 		35.6
(3)
P 		14.9
(-2.7)
P 		22
B 25.4
(3)
A 		24.2
(2.6)
P 		24.4
(2.6)
P 		8.8
(-3)
M 		17
C 23.5
(0)
P 		6.5
(-3)
A 		40.5
(3)
P 		6.5
(-3)
P 		34
avr 27.7
(1.5) 		14.8
(-1.8) 		33.5
(3) 		10.1
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1545
1 2 3 4 5 6 range
A 765.1
(-3)
P 		2310.3
(3)
P 		1832.3
(1.1)
P 		1359.2
(-0.7)
P 		1282.2
(-1)
P 		877.7
(-2.6)
P 		1545
B 1297.2
(-3)
P 		2238.6
(3)
P 		1995.8
(1.5)
P 		1439.8
(-2.1)
P 		1935.9
(1.1)
P 		1567.2
(-1.3)
P 		941
C 1180.1
(-2.5)
P 		2279.2
(3)
P 		2004.8
(1.6)
P 		1080.2
(-3)
P 		1283.1
(-2)
P 		1488.8
(-1)
P 		1199
avr 1080.8
(-3) 		2276
(3) 		1944.3
(1.3) 		1293.1
(-1.9) 		1500.4
(-0.9) 		1311.2
(-1.8) 		1195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14633
Sequence Type Exemplar sequence
Representative Public ID F44G3.2 NCBI
Target Description F44G3.2 /REP_DB=WormBase Gene ID /WP=CE16034 /TR=O45518 /GB=CAB05517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=arginine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074653 NCBI Caenorhabditis elegans F44G3.2 (F44G3.2) mRNA, complete cds. 11/11 None
SNAP00000003412 ENSEMBL cdna:SNAP chromosome:CEL140:V:16106518:16108482:1 11/11 None
GENEFINDER00000003431 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16106518:16109980:1 11/11 None
F44G3.2 ENSEMBL cdna:known chromosome:CEL140:V:16106477:16108530:1 gene:F44G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16106517-16108482(+) 100.0 100.0
Public Domain and Genome References
Gene Title arginine kinase
Ensembl F44G3.2
Entrez Gene 180080 Entrez gene
SwissProt O45518 EMBL-EBI
WormBase CE16034 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
16772 transferase activity, transferring phosphorus-containing groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05517 Hypothetical protein F44G3.2 [Caenorhabditis elegans] ref|NP_507054.1| F44G3.2 [Caenorhabditis elegans] 0.0
blast NP_491057 W10C8.5 [Caenorhabditis elegans] gb|AAK21503.1| Hypothetical protein W10C8.5 [Caenorhabditis elegans] 0.0
blast AAB54206 Hypothetical protein F32B5.1 [Caenorhabditis elegans] ref|NP_491027.1| F32B5.1 [Caenorhabditis elegans] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 2.3E-28
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 1.0E-126
Pfam IPR000749 EMBL-EBI ATP:guanido phosphotransferase 7.0E-124
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:189178_AT
aaggggacttactatccgttggatggaatgagcaaggatacccagaaccagttgattgct
gatcacttcctgttcaaggaaggcgacaggcatcttcaatacgcaaatgcttgcaacttc
tggccaaaaggacgcggtattttccataacaacaagaaaacttttttgatttgggtgaat
gaagaggatcatttgagaattatttcaatgcaagaaggatctgatgttggtgctgttctc
gaaagacttatcaagggagttcgtggaattgagaagcaggttcaattctcgcgcgatgat
cgtctcgggtggctgacgttctgcccaactaaccttggttcaactgttcgtgcatctgtt
cacattgctcttccaaaactcagcgctcgtgaagacttcaagcaaatctgcgataagctt
gacctccagctgcgcggaattcacggtgaacactcggaatctgagggaggagtttatgac
atttctaacagggctcgtctcggactctcggagtacgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGGGACTTACTATCCGTTGGATG 478 159 550 Antisense
ATCTGATGTTGGTGCTGTTCTCGAA 610 33 768 Antisense
TCAATTCTCGCGCGATGATCGTCTC 95 633 831 Antisense
TGATCGTCTCGGGTGGCTGACGTTC 529 565 846 Antisense
AACCTTGGTTCAACTGTTCGTGCAT 676 147 880 Antisense
GTTCGTGCATCTGTTCACATTGCTC 657 441 895 Antisense
AACTCAGCGCTCGTGAAGACTTCAA 216 141 926 Antisense
ATCTGCGATAAGCTTGACCTCCAGC 127 33 955 Antisense
CAGCTGCGCGGAATTCACGGTGAAC 198 203 976 Antisense
GACATTTCTAACAGGGCTCGTCTCG 204 369 1027 Antisense
TCGTCTCGGACTCTCGGAGTACGAA 95 605 1044 Antisense
Sequence Source Affymetrix Proprietary Database