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[189169_s_at] flavin-containing monooxygenase

Description H24K24.5 /REP_DB=WormBase Gene ID /WP=CE20989 /TR=Q9N5L1 /GB=AAF39901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=monooxygenase
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 79      6grp_total > 57      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28050
1 2 3 4 range
A 715.6
(-2.9)
P 		450.5
(-3)
P 		524.9
(-3)
P 		28221.4
(3)
P 		27771
B 787.4
(-2.9)
P 		503.3
(-3)
P 		585.1
(-3)
P 		24704.2
(3)
P 		24201
C 602.3
(-3)
P 		479.2
(-3)
P 		499.3
(-3)
P 		28500.5
(3)
P 		28021
avr 701.8
(-2.9) 		477.7
(-3) 		536.4
(-3) 		27142
(3) 		26664

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4412
1 2 3 4 5 6 range
A 2316.8
(-0.8)
P 		1300.7
(-2.2)
P 		1522.1
(-1.9)
P 		1264.7
(-2.2)
P 		708.1
(-3)
P 		5120.2
(3)
P 		4412
B 2062
(-0.7)
P 		1332.2
(-2)
P 		1569.1
(-1.6)
P 		1058.7
(-2.5)
P 		817.5
(-3)
P 		4003.8
(3)
P 		3186
C 2210.9
(-0.5)
P 		1231.9
(-2.3)
P 		1955.2
(-1)
P 		1124.5
(-2.5)
P 		830.5
(-3)
P 		4139.9
(3)
P 		3309
avr 2196.6
(-0.7) 		1288.3
(-2.2) 		1682.1
(-1.5) 		1149.3
(-2.4) 		785.4
(-3) 		4421.3
(3) 		3636
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5167
1 2 3 4 range
A 260.5
(-2.8)
P 		97.8
(-3)
P 		137.2
(-2.9)
P 		4131.1
(3)
P 		4033
B 251.1
(-2.9)
P 		124.3
(-3)
P 		135.6
(-3)
P 		5264.5
(3)
P 		5140
C 199.4
(-2.9)
P 		137.8
(-3)
P 		174
(-3)
P 		4805.6
(3)
P 		4668
avr 237
(-2.8) 		120
(-3) 		148.9
(-3) 		4733.7
(3) 		4614

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1279
1 2 3 4 5 6 range
A 427.1
(-1.8)
P 		462.6
(-1.6)
P 		331.5
(-2.3)
P 		320.8
(-2.4)
P 		213.7
(-3)
P 		1246.6
(3)
P 		1033
B 717.5
(-0.8)
P 		443.4
(-2.2)
P 		381
(-2.5)
P 		280.4
(-3)
P 		332.2
(-2.7)
P 		1493
(3)
P 		1213
C 819.5
(0.1)
P 		375.9
(-2.2)
P 		497.6
(-1.6)
P 		226.1
(-3)
P 		268.7
(-2.8)
P 		1385.9
(3)
P 		1160
avr 654.7
(-0.9) 		427.3
(-2.2) 		403.4
(-2.3) 		275.8
(-3) 		271.5
(-3) 		1375.2
(3) 		1104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189169_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15066
Sequence Type Exemplar sequence
Representative Public ID H24K24.5 NCBI
Target Description H24K24.5 /REP_DB=WormBase Gene ID /WP=CE20989 /TR=Q9N5L1 /GB=AAF39901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=monooxygenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070951 NCBI Caenorhabditis elegans Flavin-containing MonoOxygenase family member (fmo-5) (fmo-5) mRNA, complete cds. 11/11 None
SNAP00000006369 ENSEMBL cdna:SNAP chromosome:CEL140:V:899210:910545:-1 11/11 None
GENEFINDER00000006374 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:899214:903377:-1 11/11 None
H24K24.5 ENSEMBL cdna:known chromosome:CEL140:V:899141:903409:-1 gene:H24K24.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:899209-903377(-) 100.0 100.0
Public Domain and Genome References
Gene Title flavin-containing monooxygenase
Gene Symbol fmo-5
Ensembl H24K24.5
Entrez Gene 178596 Entrez gene
SwissProt Q9N5L1 EMBL-EBI
WormBase CE20989 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265121_AT flavin-containing monooxygenase family protein / FMO family protein at
ATGENOME1:20524_AT flavin-containing monooxygenase family protein / FMO family protein at
CANINE:1595863_AT similar to Dimethylaniline monooxygenase [N-oxide-forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) cfa
CANINE_2:CFA.14546.1.A1_S_AT similar to Dimethylaniline monooxygenase [N-oxide-forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) cfa
CANINE_2:CFAAFFX.17017.1.S1_AT similar to Dimethylaniline monooxygenase [N-oxide-forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) cfa
CANINE_2:CFAAFFX.17026.1.S1_S_AT similar to Dimethylaniline monooxygenase [N-oxide-forming] 5 (Hepatic flavin-containing monooxygenase 5) (FMO 5) (Dimethylaniline oxidase 5) cfa
HG-U133_PLUS_2:215300_S_AT flavin containing monooxygenase 5 hs
HG-U133A_2:215300_S_AT flavin containing monooxygenase 5 hs
HG-U133A:215300_S_AT flavin containing monooxygenase 5 hs
HG-U133_PLUS_2:205776_AT flavin containing monooxygenase 5 hs
HG-U133A:205776_AT flavin containing monooxygenase 5 hs
HG-FOCUS:205776_AT flavin containing monooxygenase 5 hs
HG-U133A_2:205776_AT flavin containing monooxygenase 5 hs
HU35KSUBA:RC_AA148480_S_AT flavin containing monooxygenase 5 hs
HUGENEFL:Z47553_AT flavin containing monooxygenase 5 hs
U133_X3P:G4503760_3P_AT flavin containing monooxygenase 5 hs
U133_X3P:HS2.382841.1.S1_3P_AT flavin containing monooxygenase 5 hs
U133_X3P:HS.14286.1.S1_3P_X_AT flavin containing monooxygenase 5 hs
U133_X3P:215300_3P_S_AT flavin containing monooxygenase 5 hs
HG-U133_PLUS_2:1569688_AT flavin containing monooxygenase 5 hs
HG-U95AV2:37874_AT flavin containing monooxygenase 5 hs
HG-U133_PLUS_2:240422_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HG-U133B:240422_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HG-U95B:49680_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HG-U95E:81117_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HG-U95D:87672_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HU35KSUBB:RC_AA022841_AT Chaperonin containing TCP1, subunit 8 (theta) hs
HU35KSUBB:RC_H51750_AT Chaperonin containing TCP1, subunit 8 (theta) hs
U133_X3P:HS.116195.0.A1_3P_AT Chaperonin containing TCP1, subunit 8 (theta) hs
MOUSE430_2:1421709_A_AT flavin containing monooxygenase 5 mm
MOE430A:1421709_A_AT flavin containing monooxygenase 5 mm
MOUSE430A_2:1421709_A_AT flavin containing monooxygenase 5 mm
MOUSE430_2:1450332_S_AT flavin containing monooxygenase 5 mm
MOE430A:1450332_S_AT flavin containing monooxygenase 5 mm
MOUSE430A_2:1450332_S_AT flavin containing monooxygenase 5 mm
MU11KSUBA:U90535_S_AT flavin containing monooxygenase 5 mm
MG-U74AV2:162259_F_AT flavin containing monooxygenase 5 mm
MG-U74AV2:160088_AT flavin containing monooxygenase 5 mm
MG-U74BV2:111622_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
MOE430B:1440899_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
MOUSE430_2:1440899_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
MU19KSUBB:TC29910_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
MU19KSUBB:TC29910_G_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
MU19KSUBC:TC41432_AT Flavin containing monooxygenase 5, mRNA (cDNA clone MGC:29923 IMAGE:5123876) mm
RG-U34C:RC_AI233199_AT flavin containing monooxygenase 5 rn
RAE230B:1383248_AT flavin containing monooxygenase 5 rn
RAT230_2:1383248_AT flavin containing monooxygenase 5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5792 microsome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
4499 dimethylaniline monooxygenase (N-oxide-forming) activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39901 Flavin-containing monooxygenase family protein 5 [Caenorhabditis elegans] ref|NP_503352.1| Flavin-containing MonoOxygenase family member (fmo-5) [Caenorhabditis elegans] emb|CAE46543.1| flavin monooxygenase [Caenorhabditis elegans] 0.0
blast CAB97238 Hypothetical protein Y39A1A.19 [Caenorhabditis elegans] ref|NP_499356.1| Flavin-containing MonoOxygenase family member (fmo-3) [Caenorhabditis elegans] emb|CAE46542.1| flavin monooxygenase [Caenorhabditis elegans] 0.0
blast CAE71419 Hypothetical protein CBG18329 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 1.0E-126
Pfam IPR000960 EMBL-EBI Flavin-containing monooxygenase FMO 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189169_S_AT
ttattcttgccactggattctcctaccattttgacatgatcgagggcggaaaattgattg
aagtcgatgagaataagtcggatatctacaagtatgtatttcctctggcaactgctgacc
ataatactttggcggtgattgggttgattcagcctttgggatcgattatgccgatcagtg
agatgcaggcgagagtctatatggagtcatttgcaaatgggatgaagcttccgagtaaag
atcagatgctgaccgacatcgccgaaaaacgagaaatcatgagtgctcgctacgtggcaa
gtcgtcgtcacactattcaagtcgactatgcctcctatatgcatgaacttggtgaaatca
tcggatgcaacccggacatgagatctctctggatgtggaagcccttgacagcctggaaag
tatactttggcccgtgtgttccatatgtgttcagattgaatggtccgaataagtgggaag
gcgccgaggcggcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTCTTGCCACTGGATTCTCCTA 460 679 992 Antisense
GTATGTATTTCCTCTGGCAACTGCT 611 455 1083 Antisense
GGGTTGATTCAGCCTTTGGGATCGA 205 497 1132 Antisense
AGATCAGATGCTGACCGACATCGCC 338 65 1230 Antisense
AATCATGAGTGCTCGCTACGTGGCA 318 171 1266 Antisense
TACGTGGCAAGTCGTCGTCACACTA 509 647 1282 Antisense
AGTCGACTATGCCTCCTATATGCAT 292 47 1311 Antisense
CAACCCGGACATGAGATCTCTCTGG 221 187 1359 Antisense
CTGGATGTGGAAGCCCTTGACAGCC 536 239 1380 Antisense
GGAAAGTATACTTTGGCCCGTGTGT 427 525 1406 Antisense
GTGGGAAGGCGCCGAGGCGGCGATC 218 487 1464 Antisense
Sequence Source Affymetrix Proprietary Database