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[189168_at] 7TM chemoreceptor, srg family

Description T12A2.10 /REP_DB=WormBase Gene ID /WP=CE07479 /GEN=srg-9 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster 6grp_total > 93      4grp_total > 04      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 17.4
(-2.7)
A 		12
(-3)
A 		35.5
(-1.7)
A 		118.7
(3)
P 		107
B 53
(3)
P 		22.7
(-3)
A 		40.2
(0.5)
A 		36.6
(-0.2)
A 		30
C 46.6
(0.5)
A 		44.5
(0.3)
A 		6.5
(-3)
A 		76.2
(3)
M 		70
avr 39
(-1.5) 		26.4
(-3) 		27.4
(-2.9) 		77.2
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 11.4
(-1.8)
A 		30.9
(0.8)
A 		44.9
(2.6)
A 		2.3
(-3)
A 		47.9
(3)
A 		5.2
(-2.6)
A 		46
B 24.8
(1.7)
A 		13.9
(-0.5)
A 		3
(-2.6)
A 		1.8
(-2.9)
A 		31.5
(3)
A 		1.1
(-3)
A 		30
C 1.5
(-3)
A 		34.6
(2.1)
A 		5.2
(-2.4)
A 		15.6
(-0.8)
A 		40.2
(3)
A 		18.5
(-0.4)
A 		39
avr 12.6
(-1.9) 		26.5
(0.6) 		17.7
(-1) 		6.6
(-3) 		39.9
(3) 		8.3
(-2.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.3
(-1.5)
A 		2.6
(-3)
A 		9.3
(-0.3)
A 		17.4
(3)
P 		15
B 16.9
(3)
P 		5.6
(-3)
A 		9.3
(-1)
A 		7.8
(-1.8)
A 		11
C 15.4
(3)
A 		12.8
(1.8)
A 		2.3
(-3)
A 		12.8
(1.8)
M 		13
avr 12.9
(3) 		7
(-3) 		7
(-3) 		12.7
(2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.1
(-2.4)
A 		11
(1.5)
A 		9.8
(1)
A 		0.6
(-3)
A 		14.5
(3)
A 		1.3
(-2.7)
A 		14
B 8.6
(1)
A 		4.6
(-1)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		12.8
(3)
A 		0.4
(-3)
A 		12
C 0.5
(-3)
A 		10.6
(1.8)
A 		1.3
(-2.6)
A 		3.1
(-1.8)
A 		13
(3)
A 		6.2
(-0.3)
A 		13
avr 3.7
(-1.9) 		8.7
(0.7) 		3.9
(-1.8) 		1.4
(-3) 		13.4
(3) 		2.6
(-2.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6414
Sequence Type Exemplar sequence
Representative Public ID T12A2.10 NCBI
Target Description T12A2.10 /REP_DB=WormBase Gene ID /WP=CE07479 /GEN=srg-9 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=seven-transmembrane receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065964 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-9) (srg-9) mRNA, complete cds. 11/11 None
T12A2.10 ENSEMBL cdna:known chromosome:CEL140:III:6255398:6256714:-1 gene:T12A2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026130 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6255396-6256713(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-9
Ensembl T12A2.10
Entrez Gene 191835 Entrez gene
SwissProt P46566 EMBL-EBI
WormBase CE07479 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24450 Serpentine receptor, class g (gamma) protein 9 [Caenorhabditis elegans] ref|NP_498365.1| Serpentine Receptor, class G (gamma) family member (srg-9) [Caenorhabditis elegans] sp|P46566|SRG9_CAEEL Serpentine receptor class gamma-9 (Protein srg-9) 1.0E-178
blast 2123261AJ chemosensory receptor 1.0E-177
blast CAE70737 Hypothetical protein CBG17482 [Caenorhabditis briggsae] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498365.1 7 29-51,63-85,111-133,154-186,201-223,236-258,271-293
T12A2.10 7 29-51,63-85,111-133,154-186,201-223,236-258,271-293
Sequence
Target Sequence 
>C. ELEGANS:189168_AT
gttatctggccagttgaccacaacaaagtttggtctaaaaacctttcattcattgttgca
ttcgtctcattatcaccattcctaataatttggaataccataatatctccaaaaataata
atttactatttcggaggatttttcatgcttgggttgaaagcagtggagtgggctgatatc
tcattatttttatttttggttagatcagttgccgttataattactgtagcttctactgta
atcatgtttctaagaatgtcgaaaatgaaaaaaagaatgaaatcatcggaaaggactctt
tgtttggcgtgtgtaatccattcaatttgttttatggttccgtcattttttgaggctctc
gcaaatttcaacgaagcatacggcagttcttgggtcaattttctcattcaaccatttgca
tgggatgttctcaatgttggatctccgttgataatgatattcgtcagcggtcaactacgc
caccatgtattggagatctcaattggatgctgtaaaccgaaaaataaacccaaaactatc
acagttcacactgtaactgctcatgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCTGGCCAGTTGACCACAACA 602 447 424 Antisense
ACCTTTCATTCATTGTTGCATTCGT 315 87 464 Antisense
TTGCATTCGTCTCATTATCACCATT 302 703 479 Antisense
AAAGGACTCTTTGTTTGGCGTGTGT 494 111 713 Antisense
GGTTCCGTCATTTTTTGAGGCTCTC 405 507 759 Antisense
GAGGCTCTCGCAAATTTCAACGAAG 498 405 775 Antisense
AGCATACGGCAGTTCTTGGGTCAAT 705 77 798 Antisense
TTGGGTCAATTTTCTCATTCAACCA 692 707 813 Antisense
GGATGTTCTCAATGTTGGATCTCCG 116 515 846 Antisense
TATTCGTCAGCGGTCAACTACGCCA 356 663 881 Antisense
GTTCACACTGTAACTGCTCATGTTT 317 445 967 Antisense
Sequence Source Affymetrix Proprietary Database