[Home] | [Total List]

[189167_at]

Description Y49E10.11 /REP_DB=WormBase Gene ID /WP=CE28133 /TR=Q9U280 /GB=CAB11550.4 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=P-type ATPase
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 70      6grp_total > 08      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 454.8
(3)
P 		281.9
(-0.6)
P 		211.6
(-2.1)
P 		167
(-3)
P 		288
B 374.6
(3)
P 		186.2
(-2.2)
P 		195.5
(-2)
P 		158.4
(-3)
P 		216
C 434.8
(3)
P 		266.2
(-2.6)
P 		252.7
(-3)
P 		271.9
(-2.4)
P 		182
avr 421.4
(3) 		244.8
(-1.8) 		219.9
(-2.4) 		199.1
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 392.9
(2.6)
P 		405.6
(3)
P 		208.4
(-3)
P 		370.4
(1.9)
P 		282.1
(-0.8)
P 		406.8
(3)
P 		198
B 333.4
(3)
P 		316.5
(2.1)
P 		263.9
(-0.8)
P 		312.1
(1.8)
P 		269.6
(-0.5)
P 		223.5
(-3)
P 		110
C 590.8
(3)
P 		296.7
(-1.6)
P 		389.8
(-0.2)
P 		325.8
(-1.2)
P 		305.7
(-1.5)
P 		209.5
(-3)
P 		381
avr 439
(3) 		339.6
(-0.7) 		287.4
(-2.7) 		336.1
(-0.9) 		285.8
(-2.8) 		279.9
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 165.6
(3)
P 		61.2
(-1.4)
P 		55.3
(-1.7)
P 		24.5
(-3)
P 		141
B 119.5
(3)
P 		46
(-2.1)
P 		45.3
(-2.2)
P 		33.8
(-3)
P 		86
C 143.9
(3)
P 		76.5
(-1.1)
P 		88.1
(-0.4)
P 		45.8
(-3)
P 		98
avr 143
(3) 		61.2
(-1.5) 		62.9
(-1.4) 		34.7
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 72.4
(-1.4)
P 		144.2
(3)
P 		45.4
(-3)
P 		94
(-0)
P 		85.1
(-0.6)
P 		99
(0.3)
P 		99
B 116
(3)
P 		105.3
(1.8)
P 		64.1
(-3)
P 		82.7
(-0.8)
P 		109.5
(2.2)
P 		83.4
(-0.8)
P 		52
C 219
(3)
P 		90.5
(-2)
P 		99.2
(-1.7)
P 		65.5
(-3)
P 		98.9
(-1.7)
P 		70.1
(-2.8)
P 		154
avr 135.8
(3) 		113.3
(1) 		69.6
(-3) 		80.7
(-2) 		97.8
(-0.4) 		84.2
(-1.7) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7436
Sequence Type Exemplar sequence
Representative Public ID Y49E10.11 NCBI
Target Description Y49E10.11 /REP_DB=WormBase Gene ID /WP=CE28133 /TR=Q9U280 /GB=CAB11550.4 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=P-type ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027723(11), NM_001027724(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027723 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) (tat-1) mRNA, complete cds. 11/11 None
NM_001027724 NCBI Caenorhabditis elegans Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) (tat-1) mRNA, complete cds. 9/11 None
SNAP00000016080 ENSEMBL cdna:SNAP chromosome:CEL140:III:12399238:12426386:-1 11/11 None
GENEFINDER00000016104 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12405593:12410067:-1 9/11 None
Y49E10.11a ENSEMBL cdna:known chromosome:CEL140:III:12398799:12420539:-1 gene:Y49E10.11 11/11 A 
Y49E10.11b ENSEMBL cdna:known chromosome:CEL140:III:12404007:12421380:-1 gene:Y49E10.11 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016117 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12399233-12420535(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y49E10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11550 Hypothetical protein Y49E10.11a [Caenorhabditis elegans] ref|NP_001022894.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) [Caenorhabditis elegans] 0.0
blast CAE54923 Hypothetical protein Y49E10.11b [Caenorhabditis elegans] ref|NP_001022895.1| Transbilayer Amphipath Transporters (subfamily IV P-type ATPase) family member (tat-1) [Caenorhabditis elegans] 0.0
blast CAE66475 Hypothetical protein CBG11754 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A8A1_HUMAN (Q9Y2Q0) Potential phospholipid-transporting ATPase IA (EC 3.6.3.1) (Chromaffin granule ATPase II) (ATPase class I type 8A member 1) 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022894.1 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
NP_001022895.1 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
Y49E10.11a 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
Y49E10.11b 8 276-298,318-340,823-845,855-877,898-920,935-957,970-992,1007-1029
SNAP00000016080 6 387-409,419-441,462-484,499-521,534-556,571-593
GENEFINDER00000016104 6 185-207,217-239,260-282,297-319,332-354,369-391
Sequence
Target Sequence 
>C. ELEGANS:189167_AT
ggaatttctcactttggattggcctagccattgtgcattcattatcgctgttcttcttga
cttacgcgacaatggagcatcaagttgtctgggataatgggctcactggcggatggctta
tgctcggaaattgtgcatatacgttcgtggtggccactgtctgcttcaaagccctactag
aatgtgattcatggacatggcctgtagtagtcgcgtgtattggatcgattggcctttgga
ttgtattcgttattgtatactctctagtcttcccacacattggtggaatcggtgcagata
tggctggaatggctgcaattatgatgtcatcttatacgttctggcttgcacttttattca
ttccacttgccacgctgctatgggatttggttattaaaagctattcatcaaacgtactcg
aaaacatgcggcttttgacatcatctctacgtggcagtaccactggaagtacacgatcaa
gaactgcatcagaagcttcactagcacttgctgaacagacgagatacggcttcgcatttt
cc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTTCTCACTTTGGATTGGCCT 609 531 2717 Antisense
TTGGCCTAGCCATTGTGCATTCATT 15 709 2735 Antisense
TTATCGCTGTTCTTCTTGACTTACG 220 681 2758 Antisense
CACTGGCGGATGGCTTATGCTCGGA 631 197 2820 Antisense
GCATATACGTTCGTGGTGGCCACTG 428 305 2851 Antisense
GACATGGCCTGTAGTAGTCGCGTGT 366 369 2910 Antisense
TATTGTATACTCTCTAGTCTTCCCA 595 665 2967 Antisense
GATGTCATCTTATACGTTCTGGCTT 228 409 3039 Antisense
TCTGGCTTGCACTTTTATTCATTCC 704 607 3056 Antisense
TTGACATCATCTCTACGTGGCAGTA 263 705 3151 Antisense
GACGAGATACGGCTTCGCATTTTCC 294 379 3234 Antisense
Sequence Source Affymetrix Proprietary Database