[Home] | [Total List]

[189164_at] EGF-like domain

Description F58B3.8 /REP_DB=WormBase Gene ID /WP=CE06010 /TR=Q20971 /GB=CAA97804.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster 6grp_total > 07      4grp_total > 52      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 118.1
(3)
A 		66.2
(0.1)
A 		68.2
(0.2)
A 		12.3
(-3)
A 		106
B 68.1
(0.3)
A 		116.5
(3)
A 		64.7
(0.2)
A 		7.1
(-3)
A 		109
C 109.3
(2.2)
A 		124
(3)
A 		77.2
(0.4)
A 		17.2
(-3)
A 		107
avr 98.5
(2.8) 		102.2
(3) 		70
(0.9) 		12.2
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 212.9
(3)
A 		70
(-1.1)
A 		73.3
(-1)
A 		81.5
(-0.8)
A 		25.5
(-2.4)
A 		5.2
(-3)
A 		208
B 150.2
(3)
A 		99.3
(0.3)
A 		87.4
(-0.4)
A 		42.3
(-2.8)
A 		39
(-3)
A 		41.8
(-2.8)
A 		111
C 119.5
(3)
A 		93.3
(1.6)
A 		88.4
(1.3)
A 		33.3
(-1.7)
A 		9.7
(-3)
A 		34.7
(-1.6)
A 		110
avr 160.9
(3) 		87.5
(-0.2) 		83
(-0.4) 		52.4
(-1.8) 		24.7
(-3) 		27.2
(-2.9) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 43
(3)
A 		14.4
(-1.2)
A 		17.8
(-0.7)
A 		1.8
(-3)
A 		41
B 21.7
(1.4)
A 		28.8
(3)
A 		15
(-0)
A 		1.5
(-3)
A 		27
C 36.2
(3)
A 		35.6
(2.9)
A 		26.9
(1.3)
A 		2.9
(-3)
A 		33
avr 33.6
(3) 		26.3
(1.6) 		19.9
(0.4) 		2.1
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 39.2
(3)
A 		24.9
(0.7)
A 		16
(-0.7)
A 		20.7
(0.1)
A 		7.7
(-2)
A 		1.3
(-3)
A 		38
B 52.2
(3)
A 		33.1
(0.2)
A 		21.2
(-1.5)
A 		11.2
(-3)
A 		15.8
(-2.3)
A 		15.6
(-2.4)
A 		41
C 44.3
(3)
A 		28.5
(0.7)
A 		22.5
(-0.2)
A 		6.7
(-2.5)
A 		3.1
(-3)
A 		11.6
(-1.8)
A 		41
avr 45.2
(3) 		28.8
(0.3) 		19.9
(-1.2) 		12.9
(-2.3) 		8.9
(-3) 		9.5
(-2.9) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9007
Sequence Type Exemplar sequence
Representative Public ID F58B3.8 NCBI
Target Description F58B3.8 /REP_DB=WormBase Gene ID /WP=CE06010 /TR=Q20971 /GB=CAA97804.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=EGF-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069790 NCBI Caenorhabditis elegans Delta/Serrate/Lag-2 domain family member (dsl-5) (dsl-5) mRNA, complete cds. 11/11 None
GENEFINDER00000008584 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11619472:11620908:-1 11/11 None
F58B3.8 ENSEMBL cdna:known chromosome:CEL140:IV:11619472:11620908:-1 gene:F58B3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11619477-11620914(-) 100.0 100.0
Public Domain and Genome References
Gene Title EGF-like domain
Gene Symbol dsl-5
Ensembl F58B3.8
Entrez Gene 186492 Entrez gene
SwissProt Q20971 EMBL-EBI
WormBase CE06010 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97804 Hypothetical protein F58B3.8 [Caenorhabditis elegans] ref|NP_502191.1| Delta/Serrate/Lag-2 domain family member (dsl-5) [Caenorhabditis elegans] 1.0E-179
blast CAB07218 Hypothetical protein H02I12.4 [Caenorhabditis elegans] ref|NP_502148.2| Delta/Serrate/Lag-2 domain family member (dsl-6) [Caenorhabditis elegans] 9.0E-56
blast AAK68460 Delta/serrate/lag-2 domain protein 3 [Caenorhabditis elegans] ref|NP_500108.1| Delta/Serrate/Lag-2 domain family member (dsl-3) [Caenorhabditis elegans] 6.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:189164_AT
acaacaattgtctcaactgttcacccacgtgttgggctgttatcaccggctgctgtagcc
agacctttaaatggaattcgaatcgttattggttgtaataaaaattggtttggtgagaaa
tgtgaaactttttgtgatgagaacaaagcaaccaactcgggaaaacactgcaattttcaa
ggaaaaccaagttgtttgaatggattaactgggtcaaagtgtgaaaaactcattgttcca
aagttgtgtaactgtgagaatggtggagtttgcattgattcaaatccaaaaccaatttgt
gaatgttcgaaagcctatcgcggtgaaaaatgtgaaaagaagcatatatcagcgtctctt
tcctcacattataaaggagacttttggaattttcgaatgacattttggcagttgatattc
tcgaatttagttgagaatgagttggcagagattagcaaatcggaagcttgggaaacaatt
aataacctattgggaaatgtttctgatactccgtttgcaaatcgtccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACAATTGTCTCAACTGTTCACC 140 113 331 Antisense
ACTGTTCACCCACGTGTTGGGCTGT 630 95 346 Antisense
CTGTTATCACCGGCTGCTGTAGCCA 383 239 367 Antisense
GGCTGCTGTAGCCAGACCTTTAAAT 332 539 378 Antisense
AAGCAACCAACTCGGGAAAACACTG 238 149 476 Antisense
GAATGTTCGAAAGCCTATCGCGGTG 471 329 631 Antisense
GAAGCATATATCAGCGTCTCTTTCC 85 341 669 Antisense
GCGTCTCTTTCCTCACATTATAAAG 261 289 682 Antisense
GACATTTTGGCAGTTGATATTCTCG 647 369 729 Antisense
GAAATGTTTCTGATACTCCGTTTGC 534 361 824 Antisense
GATACTCCGTTTGCAAATCGTCCAA 427 423 835 Antisense
Sequence Source Affymetrix Proprietary Database