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[189156_at] 7TM chemoreceptor, str family

Description Y17G9A.5 /REP_DB=WormBase Gene ID /WP=CE24179 /TR=Q9N482 /GB=AAF60441.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 50      4grp_total > 02      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 38.3
(-2.5)
A 		33.2
(-3)
A 		38.7
(-2.4)
A 		90.7
(3)
A 		58
B 34.3
(-1.8)
A 		20.5
(-3)
A 		23.9
(-2.7)
A 		90.2
(3)
A 		70
C 21.4
(-3)
A 		38.5
(-1.9)
A 		23.9
(-2.8)
A 		116.9
(3)
A 		96
avr 31.3
(-2.8) 		30.7
(-2.8) 		28.8
(-3) 		99.3
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 44.7
(3)
A 		4.9
(-3)
A 		34.9
(1.5)
A 		43.9
(2.9)
A 		14.5
(-1.6)
A 		25.9
(0.2)
A 		40
B 26.5
(-0.1)
A 		21
(-1.6)
A 		16
(-2.9)
A 		20
(-1.9)
A 		38.2
(3)
A 		15.8
(-3)
A 		22
C 33.1
(-1.7)
A 		53.9
(2.7)
P 		55.1
(3)
A 		40.9
(-0.1)
A 		27.7
(-2.9)
A 		27.2
(-3)
A 		28
avr 34.8
(2.8) 		26.6
(-1.2) 		35.3
(3) 		34.9
(2.8) 		26.8
(-1.1) 		23
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14
(3)
A 		7.2
(-3)
A 		10.1
(-0.4)
A 		13.3
(2.4)
A 		7
B 10.9
(-0.5)
A 		5.1
(-3)
A 		5.5
(-2.8)
A 		19.2
(3)
A 		14
C 7.1
(-3)
A 		11.1
(-1.1)
A 		8.3
(-2.4)
A 		19.7
(3)
A 		13
avr 10.7
(-1.2) 		7.8
(-3) 		8
(-2.9) 		17.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.2
(1.1)
A 		1.7
(-3)
A 		7.6
(0.8)
A 		11.1
(3)
A 		4.4
(-1.3)
A 		6.3
(-0.1)
A 		9
B 9.2
(-0.3)
A 		7
(-1.4)
A 		3.9
(-3)
A 		5.3
(-2.3)
A 		15.5
(3)
A 		5.9
(-2)
A 		12
C 12.3
(-0)
A 		16.5
(3)
P 		14
(1.2)
A 		8.2
(-3)
A 		9
(-2.4)
A 		9.1
(-2.3)
A 		8
avr 9.9
(3) 		8.4
(-0.2) 		8.5
(0) 		8.2
(-0.6) 		9.6
(2.4) 		7.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10691
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.5 NCBI
Target Description Y17G9A.5 /REP_DB=WormBase Gene ID /WP=CE24179 /TR=Q9N482 /GB=AAF60441.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068259 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-172) (str-172) mRNA, complete cds. 11/11 None
SNAP00000012347 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4864970:4865984:-1 11/11 None
GENEFINDER00000012352 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4864970:4867532:-1 11/11 None
Y17G9A.5 ENSEMBL cdna:known chromosome:CEL140:IV:4864970:4867649:-1 gene:Y17G9A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4864975-4867655(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-172
Ensembl Y17G9A.5
Entrez Gene 189462 Entrez gene
SwissProt Q9N482 EMBL-EBI
WormBase CE38234 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 0.0
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 1.0E-175
blast NP_500660 Seven TM Receptor family member (str-172) [Caenorhabditis elegans] gb|AAF60441.2| Seven tm receptor protein 172 [Caenorhabditis elegans] 1.0E-141
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-108
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-107
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-105
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-104
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 7.0E-97
blast NP_500662 Seven TM Receptor family member (str-174) [Caenorhabditis elegans] gb|AAF60436.2| Seven tm receptor protein 174 [Caenorhabditis elegans] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.0E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.3E-23
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.2E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500660.2 7 11-33,46-68,88-120,133-155,204-226,254-276,286-308
Y17G9A.5 7 11-33,46-68,88-110,148-170,219-241,269-291,301-323
SNAP00000012347 5 4-23,36-58,107-129,157-179,189-211
GENEFINDER00000012352 7 7-26,46-68,70-92,112-134,181-203,233-255,262-284
Sequence
Target Sequence 
>C. ELEGANS:189156_AT
ggcttctgattccattcattggcggagccgcatggttttccgcttgcttcacagttttct
cgatggatccgatgaaaactgattatgttagacaaaccacaaaagaattcttcgacctga
atattgacaattgtgtctacgcaggagctgccttttatcctctcgacaaaaatggaacta
ccgtaatttcaacaagaagctttattggattttcgctgtttctggttgttatgttaattc
catttgccatcgtgatctacgctgggatcaaaagttattttataattcgagcattgttga
aacaaggagaaacacgatatgcaaaaaacttacagatgcagttgtacaaagctcttgttg
cacagacacttatctcaatattcttccttttcatcccattcggaacaatatttgtacttc
ctatttttgaaatcaattgtcaatttttgacggcaccaatcacttttatttacgctctgt
acccggcaatcgatccattaccaattctgtttttcgtcgacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTTCTGATTCCATTCATTGGCGG 309 537 467 Antisense
TTGGCGGAGCCGCATGGTTTTCCGC 474 699 485 Antisense
GCTTCACAGTTTTCTCGATGGATCC 619 305 512 Antisense
CAATTGTGTCTACGCAGGAGCTGCC 528 179 594 Antisense
TTTTCGCTGTTTCTGGTTGTTATGT 374 677 676 Antisense
AATTCCATTTGCCATCGTGATCTAC 709 177 702 Antisense
AAAGCTCTTGTTGCACAGACACTTA 664 123 814 Antisense
GACACTTATCTCAATATTCTTCCTT 438 367 831 Antisense
GACGGCACCAATCACTTTTATTTAC 290 377 915 Antisense
GGCAATCGATCCATTACCAATTCTG 293 533 951 Antisense
TACCAATTCTGTTTTTCGTCGACTA 67 647 965 Antisense
Sequence Source Affymetrix Proprietary Database