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[189154_at] 7TM chemoreceptor, str family

Description C45H4.15 /REP_DB=WormBase Gene ID /WP=CE17554 /TR=O44699 /GB=AAC25884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 52      4grp_total > 09      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 46.3
(0.6)
A 		30.2
(-3)
A 		54.2
(2.4)
A 		57.1
(3)
A 		27
B 21.2
(-1.2)
A 		52.6
(3)
A 		26.4
(-0.5)
A 		7.9
(-3)
A 		45
C 50.7
(-1)
P 		36.4
(-3)
A 		41
(-2.4)
A 		80
(3)
A 		44
avr 39.4
(-3) 		39.7
(-2.8) 		40.5
(-2.3) 		48.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 40.1
(0.7)
A 		16.1
(-3)
A 		55.4
(3)
A 		35.7
(-0)
A 		45.9
(1.5)
P 		18.9
(-2.6)
A 		39
B 39.8
(0.4)
A 		48.4
(1.6)
A 		48.2
(1.5)
P 		58.8
(3)
A 		51
(1.9)
A 		15.4
(-3)
A 		43
C 17.2
(-3)
A 		50.7
(0.6)
A 		73.8
(3)
M 		24.2
(-2.3)
A 		23.9
(-2.3)
A 		25.3
(-2.1)
A 		57
avr 32.4
(-1.1) 		38.4
(-0.2) 		59.1
(3) 		39.6
(0) 		40.3
(0.1) 		19.9
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.9
(3)
A 		6.6
(-3)
A 		14.2
(1.4)
A 		8.4
(-2)
A 		10
B 6.8
(-0.3)
A 		13
(3)
A 		6.1
(-0.7)
A 		1.7
(-3)
A 		11
C 16.8
(3)
P 		10.5
(-3)
A 		14.3
(0.6)
A 		13.5
(-0.1)
A 		6
avr 13.5
(3) 		10
(-0.8) 		11.5
(0.9) 		7.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.4
(-1.2)
A 		5.7
(-2.3)
A 		12.1
(1.8)
A 		9
(-0.2)
A 		13.9
(3)
P 		4.6
(-3)
A 		9
B 13.8
(0.2)
A 		16.1
(1.1)
A 		11.7
(-0.6)
P 		15.6
(0.9)
A 		20.7
(3)
A 		5.8
(-3)
A 		15
C 6.4
(-2.4)
A 		15.5
(1.6)
A 		18.8
(3)
M 		4.9
(-3)
A 		7.7
(-1.8)
A 		8.5
(-1.4)
A 		14
avr 9.2
(-0.8) 		12.4
(1.6) 		14.2
(3) 		9.8
(-0.3) 		14.1
(2.9) 		6.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15472
Sequence Type Exemplar sequence
Representative Public ID C45H4.15 NCBI
Target Description C45H4.15 /REP_DB=WormBase Gene ID /WP=CE17554 /TR=O44699 /GB=AAC25884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071186 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-255) (str-255) mRNA, complete cds. 11/11 None
C45H4.15 ENSEMBL cdna:known chromosome:CEL140:V:2161328:2163702:-1 gene:C45H4.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009345 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009354 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2161327-2163702(-) 99.72 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-255
Ensembl C45H4.15
Entrez Gene 183495 Entrez gene
SwissProt O44699 EMBL-EBI
WormBase CE38161 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25884 Seven tm receptor protein 255 [Caenorhabditis elegans] ref|NP_503587.2| Seven TM Receptor family member (str-255) [Caenorhabditis elegans] 0.0
blast AAC25884 Seven tm receptor protein 255 [Caenorhabditis elegans] ref|NP_503587.2| Seven TM Receptor family member (str-255) [Caenorhabditis elegans] 1.0E-163
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 1.0E-101
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-100
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-81
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 6.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503587.2 7 6-28,35-57,88-110,129-151,203-225,255-277,292-309
C45H4.15 8 19-41,54-71,100-122,142-164,176-198,202-219,249-271,286-303
Sequence
Target Sequence 
>C. ELEGANS:189154_AT
gcgttgccgcttttgaatgggactatgttcatgttgattggaagctttgtaatgtgctct
agcccggaatctgatcgatttatgaaatctttactatttggggccttttttatggccaaa
acttggcaactcatccacggagcagtatttcagttggaaagatgcaattggggaattgtt
aagggcctatcttgcttcttaatgctctacttgggcctacgctgctaccgatgtataaac
gccacaatatcaactgctagcagctcttctcacctgaaaacaatccaaaaacagctactg
aatgcgctcgtttttcaatcgctaattcctgtattgctactgcatattcctgcctctata
atttttgtaacaatatttctgggcaaatcgacggaggcaattggggaaactgtgagcttg
acagtcgcgtggtatccggctctcaacccacttcctgctctatttattataaagagttat
cgtgatacaatcggaggttttcttgttgctcttcttcgtcgggttgttccaagaacaaat
gtggttgctacctatgagcatccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTGCCGCTTTTGAATGGGACTA 40 291 451 Antisense
TGCTCTAGCCCGGAATCTGATCGAT 324 581 505 Antisense
AAACTTGGCAACTCATCCACGGAGC 154 129 569 Antisense
GGCCTATCTTGCTTCTTAATGCTCT 303 543 634 Antisense
TCTTAATGCTCTACTTGGGCCTACG 207 617 647 Antisense
AACGCCACAATATCAACTGCTAGCA 279 145 688 Antisense
TAGCAGCTCTTCTCACCTGAAAACA 142 653 708 Antisense
ATCGCTAATTCCTGTATTGCTACTG 316 35 768 Antisense
CTACTGCATATTCCTGCCTCTATAA 125 227 787 Antisense
ATCGGAGGTTTTCTTGTTGCTCTTC 626 33 940 Antisense
GGTTGCTACCTATGAGCATCCTTCT 564 507 993 Antisense
Sequence Source Affymetrix Proprietary Database