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[189153_at] 7TM chemoreceptor, srd family

Description C39H7.7 /REP_DB=WormBase Gene ID /WP=CE25808 /GEN=srd-13 /GB=AAK72082.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 19      4grp_total > 35      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 18.7
(-1.6)
A 		47.9
(3)
A 		26.9
(-0.3)
A 		10
(-3)
A 		38
B 39.1
(0)
A 		61.8
(2.8)
P 		15
(-3)
A 		63.2
(3)
A 		48
C 28.7
(-3)
A 		71.2
(1.2)
A 		31.3
(-2.7)
A 		89.8
(3)
A 		61
avr 28.8
(-2.3) 		60.3
(3) 		24.4
(-3) 		54.3
(2) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 122.9
(3)
P 		28.4
(-2.9)
A 		41.2
(-2.1)
A 		39.6
(-2.2)
A 		57.4
(-1.1)
P 		27.2
(-3)
A 		96
B 34.7
(0.2)
P 		48.7
(3)
A 		18.8
(-2.9)
A 		18.2
(-3)
A 		19.5
(-2.7)
A 		26.3
(-1.4)
A 		31
C 18.4
(-3)
A 		55.1
(1.9)
A 		30.6
(-1.4)
A 		45.1
(0.6)
A 		63.1
(3)
P 		23.2
(-2.4)
A 		45
avr 58.7
(3) 		44.1
(0.4) 		30.2
(-2.2) 		34.3
(-1.4) 		46.7
(0.8) 		25.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.8
(0.6)
A 		10.4
(3)
A 		7
(0.7)
A 		1.5
(-3)
A 		9
B 12.5
(1.6)
A 		15.3
(3)
P 		3.5
(-3)
A 		13.5
(2.1)
A 		12
C 9.5
(-3)
A 		20.5
(3)
A 		10.9
(-2.2)
A 		15.1
(0.1)
A 		11
avr 9.6
(-1.2) 		15.4
(3) 		7.1
(-3) 		10
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 22.7
(3)
P 		10.1
(-1.7)
A 		9
(-2.1)
A 		10
(-1.7)
A 		17.3
(1)
P 		6.6
(-3)
A 		16
B 12.1
(0.9)
P 		16.2
(3)
A 		4.6
(-3)
A 		4.8
(-2.9)
A 		7.9
(-1.3)
A 		9.8
(-0.3)
A 		12
C 6.8
(-3)
A 		16.8
(1.4)
A 		7.8
(-2.6)
A 		9.1
(-2)
A 		20.4
(3)
P 		7.8
(-2.6)
A 		14
avr 13.9
(2) 		14.4
(2.4) 		7.1
(-3) 		8
(-2.3) 		15.2
(3) 		8.1
(-2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10933
Sequence Type Exemplar sequence
Representative Public ID C39H7.7 NCBI
Target Description C39H7.7 /REP_DB=WormBase Gene ID /WP=CE25808 /GEN=srd-13 /GB=AAK72082.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068437 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-13) (srd-13) mRNA, complete cds. 11/11 None
C39H7.7 ENSEMBL cdna:known chromosome:CEL140:IV:5633803:5635636:-1 gene:C39H7.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013094 1/11 Cross Hyb Matching Probes None
B0547.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5633808-5635642(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-13
Ensembl C39H7.7
Entrez Gene 191803 Entrez gene
SwissProt Q95ZX2 EMBL-EBI
WormBase CE25808 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72082 Serpentine receptor, class d (delta) protein 13 [Caenorhabditis elegans] ref|NP_500838.1| Serpentine Receptor, class D (delta) family member (srd-13) [Caenorhabditis elegans] 1.0E-165
blast T30151 hypothetical protein C39H7.6 - Caenorhabditis elegans 1.0E-159
blast CAE72686 Hypothetical protein CBG19906 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500838.1 7 10-32,44-63,91-113,126-148,184-206,233-255,270-292
C39H7.7 7 10-32,44-63,91-113,126-148,184-206,233-255,270-292
Sequence
Target Sequence 
>C. ELEGANS:189153_AT
tcgtcctgttcttgtacttatcatattcttgatctacacaccttctctgttacaatttgt
ttcatttctctgggcacaggacgatccagatgaaatgcgagaaattctcactaaacattt
cccggcatataatttgacagagcatactgtatatggaacaaaaaatattatttgcttctc
agcactttttacaattcttcatatgactctaccaattactccggtttacatttgtatttt
aattttaaggaggaaaattacatcaagattaagtgtcaatggtgttaatatcacaaagga
gacaagaaatatgcattctcaactactaatggccctaacctatcaagcagcaatacctgg
tttctacttgttcggagtaacatcttatgccattgggcaatttggaatttacaatcatcc
agctcttgaatactttacattttcgtcatttctcttgattccacttctttctccactagc
ttcttttatttttgttactccgtaccggcgatttatcatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCCTGTTCTTGTACTTATCATA 345 605 384 Antisense
TCTACACACCTTCTCTGTTACAATT 234 613 416 Antisense
CAATTTGTTTCATTTCTCTGGGCAC 325 181 436 Antisense
TCTCACTAAACATTTCCCGGCATAT 406 613 489 Antisense
GCTTCTCAGCACTTTTTACAATTCT 228 305 557 Antisense
ATGACTCTACCAATTACTCCGGTTT 483 43 586 Antisense
TTCTCAACTACTAATGGCCCTAACC 369 689 699 Antisense
GCAATACCTGGTTTCTACTTGTTCG 336 323 733 Antisense
TTTTCGTCATTTCTCTTGATTCCAC 538 677 823 Antisense
TTTCTCCACTAGCTTCTTTTATTTT 511 669 851 Antisense
ACTCCGTACCGGCGATTTATCATGC 25 99 880 Antisense
Sequence Source Affymetrix Proprietary Database