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[189152_s_at]

Description F19B6.1A /REP_DB=WormBase Gene ID /WP=CE05666 /TR=Q19583 /GB=CAA93459.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=uridine kinase
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 68      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 96      6grp_total > 79      4grp_total > 32      6grp_highest_sub > Da      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 756.1
(-3)
P 		783.1
(-2.5)
P 		1083.3
(3)
P 		853.7
(-1.2)
P 		327
B 751.7
(-3)
P 		955.1
(-0.2)
P 		901.4
(-0.9)
P 		1188.4
(3)
P 		437
C 727.4
(-3)
P 		1017.7
(1.8)
P 		1082.6
(2.9)
P 		1087.4
(3)
P 		360
avr 745.1
(-3) 		918.6
(0.5) 		1022.4
(2.6) 		1043.2
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 505
1 2 3 4 5 6 range
A 788.5
(-2.4)
P 		746.9
(-3)
P 		784.9
(-2.4)
P 		764.7
(-2.7)
P 		852.9
(-1.4)
P 		1154.6
(3)
P 		408
B 803.8
(-2.5)
P 		936.1
(-0.8)
P 		939
(-0.7)
P 		767.3
(-3)
P 		979.3
(-0.2)
P 		1218.9
(3)
P 		452
C 859.7
(-1.1)
P 		1002.4
(0.8)
P 		770.2
(-2.3)
P 		714.1
(-3)
P 		842.8
(-1.3)
P 		1173.8
(3)
P 		460
avr 817.3
(-2.1) 		895.1
(-1) 		831.4
(-1.9) 		748.7
(-3) 		891.7
(-1) 		1182.4
(3) 		434
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 275.3
(2.7)
P 		170
(-1.3)
P 		283.2
(3)
P 		125
(-3)
P 		158
B 239.7
(1.2)
P 		235.9
(0.6)
P 		208.9
(-3)
P 		253.3
(3)
P 		44
C 240.8
(-1.2)
P 		292.6
(0.4)
P 		377.3
(3)
P 		183.4
(-3)
P 		194
avr 251.9
(0.8) 		232.8
(-0.3) 		289.8
(3) 		187.2
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 145.4
(-3)
P 		265.6
(2.3)
P 		170.9
(-1.9)
P 		194
(-0.9)
P 		257.4
(2)
P 		281.1
(3)
P 		136
B 279.7
(-1.2)
P 		311.6
(-0.4)
P 		228
(-2.4)
P 		203.2
(-3)
P 		397.9
(1.6)
P 		454.5
(3)
P 		251
C 318.7
(1.2)
P 		305.9
(0.9)
P 		196
(-1.7)
P 		143.6
(-3)
P 		272.7
(0.1)
P 		392.9
(3)
P 		249
avr 247.9
(-0.9) 		294.4
(0.5) 		198.3
(-2.4) 		180.3
(-3) 		309.3
(1) 		376.2
(3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189152_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10144
Sequence Type Exemplar sequence
Representative Public ID F19B6.1A NCBI
Target Description F19B6.1A /REP_DB=WormBase Gene ID /WP=CE05666 /TR=Q19583 /GB=CAA93459.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=uridine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069950(11), NM_069949(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069950 NCBI Caenorhabditis elegans F19B6.1a (F19B6.1) mRNA, complete cds. 11/11 None
NM_069949 NCBI Caenorhabditis elegans F19B6.1b (F19B6.1) mRNA, complete cds. 11/11 None
SNAP00000008409 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12331552:12334570:-1 11/11 None
GENEFINDER00000008411 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12331552:12334570:-1 11/11 None
F19B6.1a ENSEMBL cdna:known chromosome:CEL140:IV:12329395:12334571:-1 gene:F19B6.1 11/11 A 
F19B6.1b ENSEMBL cdna:known chromosome:CEL140:IV:12331552:12334570:-1 gene:F19B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12331557-12334061(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93462 Hypothetical protein F19B6.1b [Caenorhabditis elegans] ref|NP_502350.1| F19B6.1b [Caenorhabditis elegans] 0.0
blast CAA93459 Hypothetical protein F19B6.1a [Caenorhabditis elegans] ref|NP_502351.1| F19B6.1a [Caenorhabditis elegans] 0.0
blast CAE59842 Hypothetical protein CBG03314 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 5.4E-111
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 5.4E-111
Sequence
Target Sequence 
>C. ELEGANS:189152_S_AT
ggacgctcagatttgtggtcttccaatcatgcgagccggcgaatgtatggagactgctct
tcgctcaatcgtcaaggactgcgtgatcggaaaaattttgattcaaaccaacgagacgac
gtttgatccagaacttcattatatacgtttgccaccacacataactcgatacaaagttat
cattatggacgccaccgtaactactgggagtgctgcgatgatggcaattcgtgtacttct
tgatcatgatgttaaagaggaagacatatttgttgcatctctgcttatgggtcaacaagg
tgcacatgcactggcttatgccttcccgaaggttaaattaatcaccaccgcaatggacca
ccaaatgacggaaaattgctatctgattcccggaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGCTCAGATTTGTGGTCTTCCA 587 523 1095 Antisense
TTGTGGTCTTCCAATCATGCGAGCC 242 705 1107 Antisense
CTCTTCGCTCAATCGTCAAGGACTG 293 229 1151 Antisense
GAGACGACGTTTGATCCAGAACTTC 633 387 1207 Antisense
TATATACGTTTGCCACCACACATAA 381 661 1234 Antisense
GACGCCACCGTAACTACTGGGAGTG 174 381 1282 Antisense
GATGATGGCAATTCGTGTACTTCTT 87 411 1311 Antisense
TGTTGCATCTCTGCTTATGGGTCAA 254 563 1365 Antisense
TGCACATGCACTGGCTTATGCCTTC 466 577 1395 Antisense
ATTAATCACCACCGCAATGGACCAC 378 9 1431 Antisense
AATTGCTATCTGATTCCCGGAATGG 140 179 1468 Antisense
Sequence Source Affymetrix Proprietary Database