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[189149_at] Protein kinase

Description F26A1.3 /REP_DB=WormBase Gene ID /WP=CE02684 /TR=Q19798 /GB=AAA68250.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 39.4
(2)
A 		46.3
(3)
A 		24.5
(-0.3)
A 		6.8
(-3)
A 		40
B 7.1
(-3)
A 		38.8
(2.3)
A 		8.1
(-2.8)
A 		43
(3)
A 		36
C 10.4
(-2.4)
A 		48.2
(1.9)
A 		5.6
(-3)
A 		57.3
(3)
A 		52
avr 19
(-1.8) 		44.4
(3) 		12.7
(-3) 		35.7
(1.4) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 13.8
(-2.8)
A 		10
(-3)
A 		16
(-2.6)
A 		84.7
(1.8)
P 		96.3
(2.6)
A 		102.6
(3)
A 		93
B 8.7
(-3)
A 		34.3
(-1.8)
A 		59.1
(-0.6)
A 		12.8
(-2.8)
A 		133.1
(3)
P 		85
(0.7)
A 		124
C 18.7
(-2.3)
A 		14.2
(-2.6)
A 		8.1
(-3)
A 		51
(-0.1)
A 		96.5
(3)
P 		65.5
(0.9)
P 		88
avr 13.7
(-3) 		19.5
(-2.6) 		27.7
(-2.1) 		49.5
(-0.7) 		108.6
(3) 		84.4
(1.5) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.3
(3)
A 		10.1
(1.1)
A 		6.4
(-0.6)
A 		1
(-3)
A 		13
B 2.3
(-2.7)
A 		9.6
(3)
A 		1.9
(-3)
A 		9.2
(2.7)
A 		8
C 3.4
(-2.3)
A 		13.9
(3)
A 		2
(-3)
A 		9.7
(0.9)
A 		12
avr 6.7
(-0.5) 		11.2
(3) 		3.4
(-3) 		6.6
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 2.5
(-3)
A 		3.6
(-2.8)
A 		3.5
(-2.8)
A 		21.5
(1.3)
P 		29.1
(3)
A 		25
(2.1)
A 		27
B 3
(-3)
A 		11.4
(-2)
A 		14.4
(-1.7)
A 		3.4
(-3)
A 		54.1
(3)
P 		31.7
(0.4)
A 		51
C 6.9
(-2)
A 		4.3
(-2.5)
A 		2.1
(-3)
A 		10.2
(-1.3)
A 		31.2
(3)
P 		21.9
(1.1)
P 		29
avr 4.1
(-3) 		6.4
(-2.6) 		6.7
(-2.5) 		11.7
(-1.7) 		38.1
(3) 		26.2
(0.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7649
Sequence Type Exemplar sequence
Representative Public ID F26A1.3 NCBI
Target Description F26A1.3 /REP_DB=WormBase Gene ID /WP=CE02684 /TR=Q19798 /GB=AAA68250.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065598 NCBI Caenorhabditis elegans F26A1.3 (F26A1.3) mRNA, complete cds. 11/11 None
SNAP00000001872 ENSEMBL cdna:SNAP chromosome:CEL140:III:4826948:4828882:1 11/11 None
GENEFINDER00000001895 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4826948:4828882:1 11/11 None
F26A1.3 ENSEMBL cdna:known chromosome:CEL140:III:4826948:4828882:1 gene:F26A1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4826947-4828882(+) 100.0 100.0
Public Domain and Genome References
Gene Title Protein kinase
Ensembl F26A1.3
Entrez Gene 175639 Entrez gene
SwissProt Q19798 EMBL-EBI
WormBase CE02684 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_497999 F26A1.3 [Caenorhabditis elegans] gb|AAA68250.1| Hypothetical protein F26A1.3 [Caenorhabditis elegans] 0.0
blast CAE71120 Hypothetical protein CBG17973 [Caenorhabditis briggsae] 1.0E-115
blast CAE70065 Hypothetical protein CBG16501 [Caenorhabditis briggsae] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:189149_AT
gaagattatatcgcctccagatgcactcacactgccatatctgtcaagagctgctcatga
agctacccaaaagccaatgaaagcaacaattgccatggatattgagagttggttctacat
gttactcgatttgttcgttgttctcccatggaaaaatatggttgaagaagctccaacatt
ggctgcaaagactgcgttctgggcaaatcttaccgagttcttccaaaagagagctgcaaa
actgccacctcaacttcttccaattgctcaaattgttggtaattcgtcaattgaaaagcc
atatattcaattaaaaacaattcttcgtgacggatttgacaagaacaacgccaaacagcc
atggaaacccgattggatcacgaaacgaacaccgccaaaagcgagcgcagaaatggcaag
atcaaaagagaaaggatcaattccaaagtctaacgagtcagcttctcaaacatcggatgc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATTATATCGCCTCCAGATGCA 48 339 1032 Antisense
ACTCACACTGCCATATCTGTCAAGA 563 99 1056 Antisense
GAGCTGCTCATGAAGCTACCCAAAA 154 387 1079 Antisense
GTTGGTTCTACATGTTACTCGATTT 310 437 1139 Antisense
TACTCGATTTGTTCGTTGTTCTCCC 161 647 1154 Antisense
GGCTGCAAAGACTGCGTTCTGGGCA 154 541 1212 Antisense
GGCAAATCTTACCGAGTTCTTCCAA 393 533 1233 Antisense
AAGAGAGCTGCAAAACTGCCACCTC 674 153 1258 Antisense
AACGCCAAACAGCCATGGAAACCCG 323 145 1378 Antisense
GAACACCGCCAAAAGCGAGCGCAGA 81 349 1418 Antisense
GTCAGCTTCTCAAACATCGGATGCA 75 467 1488 Antisense
Sequence Source Affymetrix Proprietary Database