[Home] | [Total List]

[189148_at]

Description C38C3.4 /REP_DB=WormBase Gene ID /WP=CE08640 /TR=O17074 /GB=AAB70335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=portein kinase
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 57      4grp_high_8_8 > 04      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1963
1 2 3 4 range
A 774.5
(-1)
P 		309.6
(-2.5)
P 		158.5
(-3)
M 		2047.4
(3)
P 		1889
B 852.5
(-1)
P 		286.3
(-2.8)
P 		209.4
(-3)
P 		2121.8
(3)
P 		1912
C 821.1
(-0.8)
P 		278.9
(-2.6)
P 		165.4
(-3)
P 		1944.1
(3)
P 		1779
avr 816
(-0.9) 		291.6
(-2.6) 		177.8
(-3) 		2037.8
(3) 		1860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 765.1
(3)
P 		474.4
(-2.4)
P 		471
(-2.5)
P 		444.1
(-3)
P 		453.4
(-2.8)
P 		748.1
(2.7)
P 		321
B 725.1
(0.9)
P 		440.9
(-2.3)
P 		376.7
(-3)
P 		463.8
(-2)
P 		677.6
(0.4)
P 		913
(3)
P 		536
C 631.2
(-0.2)
P 		503.1
(-2)
P 		437.1
(-3)
P 		534.8
(-1.6)
P 		494.7
(-2.2)
P 		846.6
(3)
P 		410
avr 707.1
(1.1) 		472.8
(-2.3) 		428.3
(-3) 		480.9
(-2.2) 		541.9
(-1.3) 		835.9
(3) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 411
1 2 3 4 range
A 282
(2.6)
P 		67.2
(-2.4)
P 		41.4
(-3)
M 		299.7
(3)
P 		258
B 271.8
(0.3)
P 		70.7
(-2.7)
P 		48.5
(-3)
P 		452.2
(3)
P 		404
C 271.8
(1.8)
P 		80.2
(-2.5)
P 		57.7
(-3)
P 		327.8
(3)
P 		270
avr 275.2
(1.4) 		72.7
(-2.5) 		49.2
(-3) 		359.9
(3) 		311

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 141
(-0.1)
P 		168.7
(2)
P 		102.6
(-3)
P 		112.6
(-2.2)
P 		136.8
(-0.4)
P 		182.1
(3)
P 		80
B 252.3
(0.9)
P 		146.8
(-1.7)
P 		91.5
(-3)
P 		122.8
(-2.2)
P 		275.3
(1.4)
P 		340.4
(3)
P 		249
C 234
(1.3)
P 		153.5
(-1.4)
P 		111.3
(-2.9)
P 		107.5
(-3)
P 		160.1
(-1.2)
P 		283.4
(3)
P 		176
avr 209.1
(0.9) 		156.3
(-1) 		101.8
(-3) 		114.3
(-2.6) 		190.7
(0.2) 		268.6
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15014
Sequence Type Exemplar sequence
Representative Public ID C38C3.4 NCBI
Target Description C38C3.4 /REP_DB=WormBase Gene ID /WP=CE08640 /TR=O17074 /GB=AAB70335.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=portein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028532
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000040090 ENSEMBL cdna:SNAP chromosome:CEL140:V:1479552:1485325:1 10/11 None
GENEFINDER00000040105 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1481880:1483721:1 10/11 None
C38C3.4a ENSEMBL cdna:known chromosome:CEL140:V:1481874:1483784:1 gene:C38C3.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028532 8/11 Cross Hyb Matching Probes None
C38C3.4b 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1481879-1483721(+) 100.0 100.0
Public Domain and Genome References
Ensembl C38C3.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE62478 Hypothetical protein CBG06575 [Caenorhabditis briggsae] 1.0E-172
blast CAE62478 Hypothetical protein CBG06575 [Caenorhabditis briggsae] 1.0E-164
blast AAQ62459 Hypothetical protein C38C3.4b [Caenorhabditis elegans] ref|NP_001023703.1| C38C3.4b [Caenorhabditis elegans] 1.0E-130
blast AAB70335 Hypothetical protein C38C3.4a [Caenorhabditis elegans] ref|NP_001023702.1| C38C3.4a [Caenorhabditis elegans] 3.0E-71
blast AAQ62459 Hypothetical protein C38C3.4b [Caenorhabditis elegans] ref|NP_001023703.1| C38C3.4b [Caenorhabditis elegans] 3.0E-51
blast CAE64351 Hypothetical protein CBG09038 [Caenorhabditis briggsae] 6.0E-51
blast AAB70335 Hypothetical protein C38C3.4a [Caenorhabditis elegans] ref|NP_001023702.1| C38C3.4a [Caenorhabditis elegans] 4.0E-50
blast CAE62478 Hypothetical protein CBG06575 [Caenorhabditis briggsae] 7.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-5
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-5
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-4
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-4
Sequence
Target Sequence 
>C. ELEGANS:189148_AT
aattatgcctctgctcggtgagaacctgatgaacctacgcttcctcttcgaagatggccg
cttttccctatccactggtcttcgtcttgcacttttcgcaattcaaccgattcaatcgct
gcatcaattgggatatgtgcacagagatattaaagcctcgaacttttgtatcgcggaccc
acaaatgcttcatcaaaatccagaagcactgaaattgtgtctaatcgactatggaatttg
ccgatcatttaaagataaaagtggcgagttgaagactccgaggaccgatataaagtttcg
tggaactaatcgatacgcgtcccttgctgcacattacggagatgaacaatcagcgaagga
tgatatggagtcatggttttatatgatgattgaactgatatcaggaaacctcccatggtc
atttatgcatcgtgatcaacataaagaggtggaattccatcgcatacaggcgtacctgat
gggtttgaagtatcaaaacacagtggactacacatttatatccgagatggtacagctcgc
aatgcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATGCCTCTGCTCGGTGAGAAC 136 175 342 Antisense
TACGCTTCCTCTTCGAAGATGGCCG 327 645 377 Antisense
TCTTCGTCTTGCACTTTTCGCAATT 489 617 420 Antisense
TTCGCAATTCAACCGATTCAATCGC 353 697 436 Antisense
GCCTCGAACTTTTGTATCGCGGACC 267 281 496 Antisense
CGGACCCACAAATGCTTCATCAAAA 260 243 515 Antisense
GTGGAACTAATCGATACGCGTCCCT 426 491 641 Antisense
GTCCCTTGCTGCACATTACGGAGAT 373 475 660 Antisense
GGAAACCTCCCATGGTCATTTATGC 689 527 745 Antisense
GGTGGAATTCCATCGCATACAGGCG 45 493 789 Antisense
AGATGGTACAGCTCGCAATGCGGAA 661 65 866 Antisense
Sequence Source Affymetrix Proprietary Database