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[189146_at]

Description F57C9.8 /REP_DB=WormBase Gene ID /WP=CE11336 /TR=O01825 /GB=AAB54191.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=beta-chimaerin
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 379.8
(2.7)
P 		192
(-1.4)
P 		120.6
(-3)
P 		393.7
(3)
P 		273
B 354.3
(2.7)
P 		166.9
(-2.2)
P 		135.3
(-3)
P 		366.6
(3)
P 		231
C 327.1
(2.6)
P 		137.3
(-2.1)
P 		99.1
(-3)
P 		341.6
(3)
P 		243
avr 353.7
(2.7) 		165.4
(-1.9) 		118.3
(-3) 		367.3
(3) 		249

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 303.6
(3)
P 		267.1
(1.7)
P 		164.4
(-1.9)
P 		131.7
(-3)
P 		193.6
(-0.8)
P 		195.6
(-0.8)
P 		172
B 402.4
(3)
P 		266.1
(-0.1)
P 		138
(-3)
P 		156.5
(-2.6)
P 		152.5
(-2.7)
P 		158.7
(-2.5)
P 		264
C 337.2
(3)
P 		250.7
(0.1)
P 		192.7
(-1.8)
P 		185.5
(-2)
P 		167.6
(-2.6)
P 		155.1
(-3)
P 		182
avr 347.7
(3) 		261.3
(0.3) 		165
(-2.8) 		157.9
(-3) 		171.2
(-2.6) 		169.8
(-2.6) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 138.3
(3)
P 		41.7
(-2.4)
P 		31.5
(-3)
P 		57.6
(-1.5)
P 		107
B 113
(3)
P 		41.2
(-2.3)
P 		31.4
(-3)
P 		78.1
(0.4)
P 		82
C 108.3
(3)
P 		39.5
(-2.6)
P 		34.6
(-3)
P 		57.6
(-1.1)
P 		74
avr 119.9
(3) 		40.8
(-2.4) 		32.5
(-3) 		64.4
(-0.8) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 56
(-0.8)
P 		95
(3)
P 		35.8
(-2.8)
P 		33.4
(-3)
P 		58.4
(-0.6)
P 		47.6
(-1.6)
P 		62
B 140
(3)
P 		88.6
(0.1)
P 		33.5
(-3)
P 		41.5
(-2.5)
P 		62
(-1.4)
P 		59.2
(-1.6)
P 		107
C 125
(3)
P 		76.5
(-0.3)
P 		49
(-2.2)
P 		37.3
(-3)
P 		54.2
(-1.8)
P 		51.9
(-2)
P 		88
avr 107
(3) 		86.7
(1.3) 		39.4
(-2.8) 		37.4
(-3) 		58.2
(-1.2) 		52.9
(-1.7) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189146_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1130
Sequence Type Exemplar sequence
Representative Public ID F57C9.8 NCBI
Target Description F57C9.8 /REP_DB=WormBase Gene ID /WP=CE11336 /TR=O01825 /GB=AAB54191.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=beta-chimaerin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059064 NCBI Caenorhabditis elegans C01F4.2a (C01F4.2) mRNA, complete cds. 11/11 A 
SNAP00000038082 ENSEMBL cdna:SNAP chromosome:CEL140:I:4850960:4854040:-1 11/11 None
GENEFINDER00000038083 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4850995:4867826:-1 10/11 None
C01F4.2a ENSEMBL cdna:known chromosome:CEL140:I:4850673:4867823:-1 gene:C01F4.2 11/11 A 
C01F4.2b ENSEMBL cdna:known chromosome:CEL140:I:4850976:4867826:-1 gene:C01F4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172102 2 1 NM_059064 189146_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4850959-4853273(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01F4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52434 Hypothetical protein C01F4.2a [Caenorhabditis elegans] ref|NP_491465.2| C01F4.2a [Caenorhabditis elegans] 0.0
blast CAE60348 Hypothetical protein CBG03944 [Caenorhabditis briggsae] 0.0
blast AAO38678 Hypothetical protein C01F4.2b [Caenorhabditis elegans] ref|NP_491466.2| C01F4.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-58
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-58
Pfam IPR000198 EMBL-EBI RhoGAP domain 1.3E-58
Pfam IPR000198 EMBL-EBI RhoGAP domain 5.1E-30
Sequence
Target Sequence 
>C. ELEGANS:189146_AT
gacaaagcccgttggctcgagagctcactacaaatggaaaagtgaaggttcaatcacaga
gaagtggctcgtggccgttctcactaaccaagactcaaactagtcctagtcgtcctgaag
gccaacactttttccctgcagactcccaagatggtcccggacccagccatagtcatcatg
atccttcgactagtggtacaacaatgtccgccacgacaactccgggtcctggaaggaaga
ctgattttagtatgaaagctgcagatgattctggtagagattctgagttctgctcggatg
agctcacatttggaacaatctctcagcctgaaacagctcgtgaaagatcagttacaatgt
ccactgcgtgtggatctccaagtacttctaattctaagaagactcctatgatggcttctc
ttcaaggagccaccacctcaaaatcagtcgacgcacgttctccatctcgtgaaagagtcg
atattcgaagtgcagctcgatcatctgccgccgctgctcgtcgccgtcttcggaatgtcg
tcagagcattccgtttcacttcgatgacacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAGCCCGTTGGCTCGAGAGCT 624 365 1073 Antisense
AACTAGTCCTAGTCGTCCTGAAGGC 585 131 1170 Antisense
TCCTGAAGGCCAACACTTTTTCCCT 17 593 1185 Antisense
GGACCCAGCCATAGTCATCATGATC 605 523 1231 Antisense
ATGATCCTTCGACTAGTGGTACAAC 354 45 1250 Antisense
GACAACTCCGGGTCCTGGAAGGAAG 630 363 1287 Antisense
TTGGAACAATCTCTCAGCCTGAAAC 159 709 1382 Antisense
AAGACTCCTATGATGGCTTCTCTTC 606 153 1471 Antisense
CAAAATCAGTCGACGCACGTTCTCC 586 189 1511 Antisense
CGAAGTGCAGCTCGATCATCTGCCG 653 251 1558 Antisense
ATTCCGTTTCACTTCGATGACACGT 243 7 1620 Antisense
Sequence Source Affymetrix Proprietary Database