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[189141_at] 7TM chemoreceptor, srt family

Description C50H11.3 /REP_DB=WormBase Gene ID /WP=CE08919 /TR=O16479 /GB=AAG24004.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 73      4grp_total > 08      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.1
(-3)
A 		5.5
(-2.6)
A 		32.5
(1.7)
A 		40.8
(3)
A 		38
B 8.5
(-3)
A 		15.1
(-1.9)
A 		18.7
(-1.4)
A 		45.9
(3)
A 		37
C 4.8
(-2.7)
A 		6.8
(-2.4)
A 		1.9
(-3)
A 		53.2
(3)
A 		51
avr 5.5
(-3) 		9.1
(-2.5) 		17.7
(-1.2) 		46.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 9.2
(-1.9)
A 		14.4
(-0.9)
A 		34.2
(3)
A 		3.5
(-3)
A 		29.9
(2.2)
A 		16.8
(-0.4)
A 		31
B 2.4
(-2.9)
A 		3.2
(-2.6)
A 		16.3
(1.6)
A 		20.5
(3)
A 		2
(-3)
A 		8.7
(-0.8)
A 		19
C 13.6
(-1)
A 		5.6
(-2.9)
A 		5.3
(-3)
A 		30.4
(3)
A 		17.3
(-0.1)
A 		13.6
(-1)
A 		25
avr 8.4
(-2.6) 		7.7
(-3) 		18.6
(3) 		18.1
(2.7) 		16.4
(1.8) 		13
(-0.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		1.2
(-2.9)
A 		8.5
(3)
A 		6
(1)
A 		7
B 2.7
(-3)
A 		3.7
(-2.2)
A 		4.3
(-1.6)
A 		9.8
(3)
A 		7
C 1.6
(-2.3)
A 		1.9
(-2.1)
A 		0.7
(-3)
A 		9
(3)
A 		8
avr 1.8
(-3) 		2.3
(-2.5) 		4.5
(-0.5) 		8.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.7
(-2.4)
A 		5.1
(0.1)
A 		7.5
(1.9)
A 		0.9
(-3)
A 		9
(3)
A 		4.1
(-0.6)
A 		8
B 0.8
(-3)
A 		1.1
(-2.6)
A 		4
(1.2)
A 		5.4
(3)
A 		0.8
(-3)
A 		3.3
(0.3)
A 		5
C 5
(1.6)
A 		1.7
(-2.5)
A 		1.3
(-3)
A 		6.1
(3)
A 		5.6
(2.4)
A 		4.5
(1)
A 		5
avr 2.5
(-3) 		2.6
(-2.8) 		4.3
(1.2) 		4.1
(0.7) 		5.1
(3) 		4
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15863
Sequence Type Exemplar sequence
Representative Public ID C50H11.3 NCBI
Target Description C50H11.3 /REP_DB=WormBase Gene ID /WP=CE08919 /TR=O16479 /GB=AAG24004.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071442 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-71) (srt-71) mRNA, complete cds. 11/11 None
SNAP00000043568 ENSEMBL cdna:SNAP chromosome:CEL140:V:3084113:3087813:1 9/11 None
C50H11.3 ENSEMBL cdna:known chromosome:CEL140:V:3083525:3085042:1 gene:C50H11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043577 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3084107-3085042(+) 95.33 95.33
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-71
Ensembl C50H11.3
Entrez Gene 183693 Entrez gene
SwissProt O16479 EMBL-EBI
WormBase CE08919 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503844 Serpentine Receptor, class T family member (srt-8) [Caenorhabditis elegans] gb|AAG24003.1| Serpentine receptor, class t protein 8 [Caenorhabditis elegans] 1.0E-138
blast NP_503843 Serpentine Receptor, class T family member (srt-71) [Caenorhabditis elegans] gb|AAG24004.1| Serpentine receptor, class t protein 71 [Caenorhabditis elegans] 1.0E-105
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 3.0E-98
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 1.0E-92
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-25
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 6.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.6E-27
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.4E-19
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.7E-18
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.7E-30
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.1E-65
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.2E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503843.1 3 5-27,34-56,76-95
C50H11.3 3 5-27,34-56,76-95
SNAP00000043568 9 7-29,44-66,73-92,159-181,188-210,225-247,267-289,304-326,338-360
Sequence
Target Sequence 
>C. ELEGANS:189141_AT
gcatgaactcagtggcagctggcatattcggtatacttggaatatcgttttgtcactatc
ccctcccaatatttgcctatggagctattggtgaagcttcgtggttaggtggaagcgttt
gctcaatcctgctagcaatcgaaagatgtgtagaaataaatccacactttccgttagaaa
tgttattccgcaagtggatcttcttctacgtctctcccgcgctaataattattagtcaaa
ttctgtggggatggagcagtgacagcatgtgcattatctacctgttattcaatagaacaa
ttcggaattctgttataaaaattattattccaaagaccattcgaatacggtacaggttgc
atgttggatttgaagaaactaaagatcatcttccaagcggctatgttttgtatgttggat
ttgaagagaaccttgcacaaactgaggcagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGAACTCAGTGGCAGCTGGCAT 286 311 44 Antisense
GCAGCTGGCATATTCGGTATACTTG 227 315 58 Antisense
TCCCCTCCCAATATTTGCCTATGGA 651 595 102 Antisense
TGGTGAAGCTTCGTGGTTAGGTGGA 56 545 132 Antisense
TGGAAGCGTTTGCTCAATCCTGCTA 89 547 153 Antisense
GAAATAAATCCACACTTTCCGTTAG 574 321 196 Antisense
GGGGATGGAGCAGTGACAGCATGTG 665 497 290 Antisense
GCATGTGCATTATCTACCTGTTATT 225 311 308 Antisense
AGATCATCTTCCAAGCGGCTATGTT 276 67 426 Antisense
GCGGCTATGTTTTGTATGTTGGATT 137 295 440 Antisense
GAACCTTGCACAAACTGAGGCAGCG 291 345 471 Antisense
Sequence Source Affymetrix Proprietary Database