[Home] | [Total List]

[189140_s_at] Aminopeptidase

Description T16G12.2 /REP_DB=WormBase Gene ID /WP=CE00626 /CHR=3 /FEA=Sanger Annotation /DEF=Aminopeptidase (HINXTON) TR:Q22530 protein_id:CAA82970.1
Cluster 6grp_total > 22      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 392
1 2 3 4 range
A 391
(3)
P 		274.7
(1.2)
P 		329
(2)
P 		9.7
(-3)
A 		381
B 331.2
(3)
P 		240.6
(1.3)
P 		285.3
(2.1)
P 		12.5
(-3)
A 		319
C 365.8
(2.4)
P 		225.9
(0.1)
P 		401.5
(3)
P 		36.8
(-3)
A 		365
avr 362.7
(3) 		247.1
(1) 		338.6
(2.6) 		19.7
(-3) 		343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 90.7
(-1.7)
P 		323.6
(3)
P 		147.8
(-0.5)
P 		181
(0.1)
P 		84
(-1.8)
A 		25.5
(-3)
A 		298
B 157.7
(3)
P 		136.4
(1.9)
P 		92.3
(-0.5)
P 		70.7
(-1.7)
M 		104.4
(0.1)
M 		46.1
(-3)
A 		112
C 223.8
(2.1)
P 		133.6
(-0.1)
P 		263.3
(3)
P 		152.4
(0.4)
P 		103.7
(-0.8)
P 		9.4
(-3)
A 		254
avr 157.4
(1.6) 		197.9
(3) 		167.8
(1.9) 		134.7
(0.8) 		97.4
(-0.5) 		27
(-3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 142.3
(3)
P 		59.6
(-0.5)
P 		86
(0.6)
P 		1.4
(-3)
A 		141
B 105.6
(3)
P 		59.4
(0.3)
P 		66.1
(0.7)
P 		2.7
(-3)
A 		103
C 121.1
(2.2)
P 		64.9
(-0.4)
P 		139.9
(3)
P 		6.2
(-3)
A 		134
avr 123
(3) 		61.3
(-0.1) 		97.3
(1.7) 		3.4
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 16.7
(-2.4)
P 		115.1
(3)
P 		32.2
(-1.6)
P 		45.9
(-0.8)
P 		25.3
(-1.9)
A 		6.2
(-3)
A 		109
B 54.9
(3)
P 		45.4
(1.5)
P 		22.4
(-2.2)
P 		18.7
(-2.8)
M 		42.4
(1)
M 		17.2
(-3)
A 		38
C 83
(3)
P 		40.8
(-0.2)
P 		67
(1.8)
P 		30.7
(-0.9)
P 		33.5
(-0.7)
P 		3.2
(-3)
A 		80
avr 51.5
(1.4) 		67.1
(3) 		40.5
(0.3) 		31.8
(-0.6) 		33.7
(-0.4) 		8.9
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189140_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6696
Sequence Type Exemplar sequence
Representative Public ID T16G12.2 NCBI
Target Description T16G12.2 /REP_DB=WormBase Gene ID /WP=CE00626 /CHR=3 /FEA=Sanger Annotation /DEF=Aminopeptidase (HINXTON) TR:Q22530 protein_id:CAA82970.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066829(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066829 NCBI Caenorhabditis elegans T16G12.1 (Aminopeptidase) mRNA, complete cds. 11/11 A 
GENEFINDER00000010177 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10038512:10050731:-1 11/11 None
SNAP00000010162 ENSEMBL cdna:SNAP chromosome:CEL140:III:10040140:10048601:-1 11/11 None
T16G12.1 ENSEMBL cdna:known chromosome:CEL140:III:10040080:10049670:-1 gene:T16G12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10044629-10049628(-) 100.0 100.0
Public Domain and Genome References
Gene Title Aminopeptidase
Ensembl T16G12.1
Entrez Gene 176416 Entrez gene
SwissProt Q22531 EMBL-EBI
WormBase CE36716 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4179 membrane alanyl aminopeptidase activity inferred from electronic annotation QuickGO AmiGO
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82971 Hypothetical protein T16G12.1 [Caenorhabditis elegans] ref|NP_499230.2| T16G12.1 [Caenorhabditis elegans] 0.0
blast CAE65056 Hypothetical protein CBG09901 [Caenorhabditis briggsae] 0.0
blast CAA82973 Hypothetical protein T16G12.7 [Caenorhabditis elegans] emb|CAA83616.1| Hypothetical protein T16G12.7 [Caenorhabditis elegans] ref|NP_499229.1| T16G12.7 [Caenorhabditis elegans] 1.0E-171
blast XP_393122 PREDICTED: similar to CG14516-PA, isoform A, partial [Apis mellifera] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.0E-39
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499230.2 1 5-24
T16G12.1 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:189140_S_AT
catcctatggagtttttgcccaagctcaaccagtactggaacaaattgctcaactgtata
gagatggaatcgatgccgaatttgtgccgagattgtacaaacttttcttccaaaattcat
acaaccaactaaaatggcaagatacatcaatttgggatacagatacattctcggaggttt
ttcttccatttgctgttcgttatgatattggtgatgtacaaaaccgcactttgaatatgt
tcgcaaatgtgaaatcagcgtgtatcaacagtctgaatggaactgcatggtgtaatccgt
attcaacaaatctccgcaaagcgatttactgtggagctgccaaatatgctccagcaactt
cagattatttcttccaaatgcttcactcgtacaataaggaagtcatcaccaatccttact
tctatcaagaatacatggcattgttagaaggcatgagttgtacacagagccctgctactc
ttaaagtattgattcgtttgttcacaacatccaccctgaatccttccactatttttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCTATGGAGTTTTTGCCCAAGC 642 209 2144 Antisense
TTGCCCAAGCTCAACCAGTACTGGA 464 701 2159 Antisense
GATGCCGAATTTGTGCCGAGATTGT 426 413 2215 Antisense
CTCGGAGGTTTTTCTTCCATTTGCT 36 231 2313 Antisense
AATCCGTATTCAACAAATCTCCGCA 232 167 2437 Antisense
TATGCTCCAGCAACTTCAGATTATT 424 657 2488 Antisense
TCTTCCAAATGCTTCACTCGTACAA 159 619 2513 Antisense
ATCACCAATCCTTACTTCTATCAAG 162 29 2548 Antisense
TACACAGAGCCCTGCTACTCTTAAA 176 641 2604 Antisense
ATTCGTTTGTTCACAACATCCACCC 528 9 2635 Antisense
CCCTGAATCCTTCCACTATTTTTGG 177 261 2657 Antisense
Sequence Source Affymetrix Proprietary Database