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[189138_s_at]

Description W03G1.6 /REP_DB=WormBase Gene ID /WP=CE17284 /TR=Q9UAY1 /GB=AAD14754.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_high_8_8 > 36      6grp_highest_nonorm > 90      6grp_total > 79      4grp_total > 44      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 146.8
(-1.8)
P 		188.7
(3)
P 		136.8
(-3)
P 		150.4
(-1.4)
P 		52
B 175.9
(3)
P 		172.8
(2.8)
P 		117.6
(-1.1)
P 		91.2
(-3)
M 		85
C 176.9
(-0.9)
P 		227.2
(3)
P 		149.8
(-3)
P 		151.7
(-2.9)
A 		77
avr 166.5
(0.3) 		196.2
(3) 		134.7
(-2.7) 		131.1
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 178.6
(-0.4)
P 		150.6
(-1.3)
P 		95.9
(-3)
P 		114.8
(-2.4)
P 		188.5
(-0.1)
P 		288.4
(3)
P 		193
B 168
(-1.1)
P 		170.9
(-0.9)
P 		131
(-2.9)
P 		128.2
(-3)
P 		147.4
(-2.1)
P 		251.5
(3)
P 		123
C 125.7
(-3)
P 		138.2
(-2.1)
P 		157.9
(-0.8)
P 		137.1
(-2.2)
P 		200.2
(2.1)
P 		213.6
(3)
P 		88
avr 157.4
(-1.5) 		153.2
(-1.7) 		128.3
(-2.9) 		126.7
(-3) 		178.7
(-0.5) 		251.2
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 53.5
(3)
P 		41
(0.6)
P 		35.8
(-0.4)
P 		22
(-3)
P 		32
B 56.1
(3)
P 		42.7
(0.8)
P 		27.3
(-1.7)
P 		19.4
(-3)
M 		37
C 58.6
(2)
P 		65.3
(3)
P 		52.2
(1)
P 		25.6
(-3)
A 		40
avr 56.1
(3) 		49.7
(1.9) 		38.4
(-0.1) 		22.3
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 32.9
(-1.5)
P 		53.6
(1)
P 		20.9
(-3)
P 		29.1
(-2)
P 		56.9
(1.4)
P 		70.2
(3)
P 		49
B 58.4
(-0.4)
P 		56.9
(-0.6)
P 		31.8
(-3)
P 		34
(-2.8)
P 		59.9
(-0.3)
P 		93.8
(3)
P 		62
C 46.6
(-0.4)
P 		42.2
(-1)
P 		40.2
(-1.3)
P 		27.6
(-3)
P 		64.8
(2.1)
P 		71.5
(3)
P 		44
avr 46
(-1) 		50.9
(-0.4) 		31
(-2.9) 		30.2
(-3) 		60.5
(0.8) 		78.5
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189138_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10874
Sequence Type Exemplar sequence
Representative Public ID W03G1.6 NCBI
Target Description W03G1.6 /REP_DB=WormBase Gene ID /WP=CE17284 /TR=Q9UAY1 /GB=AAD14754.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028249(11), NM_001028250(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028249 NCBI Caenorhabditis elegans W03G1.6a (W03G1.6) mRNA, complete cds. 11/11 None
NM_001028250 NCBI Caenorhabditis elegans W03G1.6b (W03G1.6) mRNA, complete cds. 11/11 None
SNAP00000041680 ENSEMBL cdna:SNAP chromosome:CEL140:IV:513758:519456:-1 11/11 None
GENEFINDER00000041688 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:513836:519456:-1 11/11 None
W03G1.6a ENSEMBL cdna:known chromosome:CEL140:IV:506750:519456:-1 gene:W03G1.6 11/11 None
W03G1.6b ENSEMBL cdna:known chromosome:CEL140:IV:513167:519456:-1 gene:W03G1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018490 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:507057-519456(-) 98.07 98.07
Public Domain and Genome References
Ensembl W03G1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14754 Hypothetical protein W03G1.6a [Caenorhabditis elegans] ref|NP_001023420.1| W03G1.6a [Caenorhabditis elegans] 0.0
blast AAP13765 Hypothetical protein W03G1.6b [Caenorhabditis elegans] ref|NP_001023421.1| W03G1.6b [Caenorhabditis elegans] 0.0
blast CAE58475 Hypothetical protein CBG01615 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 7.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 4.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-68
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 2.0E-78
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 8.0E-79
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 6.0E-79
hanks 2.2.5 CaMK Group; CaMK II KIN1/SNF1/Nim1; SNF1 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR001772 EMBL-EBI Kinase-associated, C-terminal 2.2E-9
Pfam IPR000719 EMBL-EBI Protein kinase 2.4E-91
Sequence
Target Sequence 
>C. ELEGANS:189138_S_AT
gaaaagtgtctacaccactccaaacacccggcctactcttcgaggactcttcagtcccgg
caatgctgagcacaagaagcgccagagagctcgatcttcggatcgtgcgagcatcggaat
gccacctggctcaccagtgtctattggaagtgcacatagtgctaataatgccgatggccg
aactccgagaagtcgcataaaaacgaatcgccttccacaacgtgtgttcacctccctgga
acggaagaaggagaagctgatcacacttctgacacctcggaaaatgcaacgagactctcc
tcaagttctgaaggatgtgaagaatatggtgaacgtgtcgatgacagcctcacaggatcc
tgaagaagtgaggaatctgctgaagaaggtgtttgacgatgaacggatgcgatacgagtt
gaacggatggaagttccttgcgacacagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAGTGTCTACACCACTCCAAAC 441 353 1593 Antisense
TCTTCAGTCCCGGCAATGCTGAGCA 388 615 1640 Antisense
CGCCAGAGAGCTCGATCTTCGGATC 10 259 1672 Antisense
ATCTTCGGATCGTGCGAGCATCGGA 534 31 1686 Antisense
CCACCTGGCTCACCAGTGTCTATTG 586 273 1714 Antisense
TAATGCCGATGGCCGAACTCCGAGA 263 635 1758 Antisense
TGTTCACCTCCCTGGAACGGAAGAA 400 559 1817 Antisense
GAAGCTGATCACACTTCTGACACCT 296 343 1845 Antisense
TGCAACGAGACTCTCCTCAAGTTCT 602 575 1877 Antisense
ATGACAGCCTCACAGGATCCTGAAG 82 43 1933 Antisense
GGATGGAAGTTCCTTGCGACACAGG 135 515 2017 Antisense
Sequence Source Affymetrix Proprietary Database