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[189137_at] oxidoreductase

Description C26D10.3 /REP_DB=WormBase Gene ID /WP=CE03026 /TR=Q18213 /GB=CAA91121.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster 6grp_total > 83      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 22
(3)
A 		4
(-3)
A 		12.7
(-0.1)
A 		14.7
(0.6)
A 		18
B 5.9
(-2.7)
A 		4.1
(-3)
A 		9.8
(-2.2)
A 		45.9
(3)
A 		42
C 58.2
(0.5)
A 		7.4
(-2.8)
A 		4.9
(-3)
A 		96
(3)
A 		91
avr 28.7
(-0) 		5.2
(-3) 		9.1
(-2.5) 		52.2
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12.3
(-2.8)
A 		21.9
(-1.6)
A 		57.5
(3)
A 		36.7
(0.3)
A 		36.7
(0.3)
A 		10.8
(-3)
A 		47
B 19.4
(-1.4)
A 		7.3
(-3)
A 		33.9
(0.5)
A 		39.8
(1.2)
A 		53.2
(3)
A 		31.8
(0.2)
A 		46
C 31.9
(2.2)
A 		11.2
(-3)
A 		31.6
(2.1)
A 		11.8
(-2.8)
A 		35.1
(3)
A 		29.2
(1.5)
A 		24
avr 21.2
(-1.4) 		13.5
(-3) 		41
(2.9) 		29.4
(0.4) 		41.7
(3) 		23.9
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8
(3)
A 		0.9
(-3)
A 		3.3
(-1)
A 		2.2
(-1.9)
A 		7
B 1.9
(-2.4)
A 		1
(-3)
A 		2.3
(-2.1)
A 		9.8
(3)
A 		9
C 19.3
(3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		16.2
(1.9)
A 		18
avr 9.7
(3) 		1.3
(-3) 		2.4
(-2.2) 		9.4
(2.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.3
(-3)
A 		7.8
(0.2)
A 		12.5
(3)
A 		9.3
(1.1)
A 		11.1
(2.2)
A 		2.6
(-2.8)
A 		10
B 6.7
(-1.7)
A 		2.4
(-3)
A 		8.2
(-1.2)
A 		10.6
(-0.4)
A 		21.6
(3)
A 		11.9
(-0)
A 		19
C 11.8
(3)
A 		3.4
(-2.4)
A 		8
(0.6)
A 		2.4
(-3)
A 		11.4
(2.7)
A 		9.8
(1.7)
A 		9
avr 6.9
(-1.6) 		4.5
(-3) 		9.6
(0) 		7.4
(-1.3) 		14.7
(3) 		8.1
(-0.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3347
Sequence Type Exemplar sequence
Representative Public ID C26D10.3 NCBI
Target Description C26D10.3 /REP_DB=WormBase Gene ID /WP=CE03026 /TR=Q18213 /GB=CAA91121.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063353 NCBI Caenorhabditis elegans C26D10.3 (oxidoreductase) mRNA, complete cds. 11/11 None
SNAP00000007134 ENSEMBL cdna:SNAP chromosome:CEL140:II:8325389:8327743:1 11/11 None
GENEFINDER00000007146 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8325389:8326755:1 11/11 None
C26D10.3 ENSEMBL cdna:known chromosome:CEL140:II:8325389:8329513:1 gene:C26D10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8325385-8326578(+) 100.0 100.0
Public Domain and Genome References
Gene Title oxidoreductase
Ensembl C26D10.3
Entrez Gene 182937 Entrez gene
SwissProt Q18213 EMBL-EBI
WormBase CE36983 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587431_AT similar to CG10721-PA cfa
CANINE_2:CFA.10421.1.S1_S_AT similar to CG10721-PA cfa
CANINE_2:CFAAFFX.19163.1.S1_S_AT similar to CG10721-PA cfa
DROSOPHILA_2:1637249_AT dm
DROSGENOME1:146534_AT dm
CHICKEN:GGA.11808.1.S1_AT similar to FLJ22028 protein gga
CHICKEN:GGA.14367.1.A1_S_AT similar to FLJ22028 protein gga
HG-U133_PLUS_2:219802_AT hypothetical protein FLJ22028 hs
HG-U133A_2:219802_AT hypothetical protein FLJ22028 hs
HG-U133A:219802_AT hypothetical protein FLJ22028 hs
U133_X3P:G13376278_3P_AT hypothetical protein FLJ22028 hs
U133_X3P:HS.193559.0.A1_3P_X_AT hypothetical protein FLJ22028 hs
U133_X3P:HS.193559.0.A1_3P_AT hypothetical protein FLJ22028 hs
HG-U133_PLUS_2:231173_AT hypothetical protein FLJ22028 hs
HG-U133B:231173_AT hypothetical protein FLJ22028 hs
HG-U95E:85905_AT hypothetical protein FLJ22028 hs
HG-U95E:86046_AT hypothetical protein FLJ22028 hs
HG-U95E:91476_I_AT Hypothetical protein FLJ22028 hs
HG-U95E:91480_R_AT Hypothetical protein FLJ22028 hs
MOE430A:1451779_AT cDNA sequence BC027061 mm
MOUSE430A_2:1451779_AT cDNA sequence BC027061 mm
MOUSE430_2:1451779_AT cDNA sequence BC027061 mm
MG-U74CV2:167409_F_AT CDNA sequence BC027061, mRNA (cDNA clone MGC:38601 IMAGE:5355217) mm
MU19KSUBA:TC25576_AT CDNA sequence BC027061, mRNA (cDNA clone MGC:38601 IMAGE:5355217) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15036 disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91121 Hypothetical protein C26D10.3 [Caenorhabditis elegans] ref|NP_495754.2| C26D10.3 [Caenorhabditis elegans] 0.0
blast CAE57691 Hypothetical protein CBG00693 [Caenorhabditis briggsae] 1.0E-138
blast CAE57691 Hypothetical protein CBG00693 [Caenorhabditis briggsae] 1.0E-137
blast CAE57691 Hypothetical protein CBG00693 [Caenorhabditis briggsae] 1.0E-133
blast AAF53874 CG10721-PA [Drosophila melanogaster] ref|NP_610023.1| CG10721-PA [Drosophila melanogaster] gb|AAY54852.1| IP11710p [Drosophila melanogaster] 3.0E-59
Sequence
Target Sequence 
>C. ELEGANS:189137_AT
aacgttcgacgtgacatggctgatcaaagatccttggatctgtgcttcgttctttccgga
agacatcgaacaattcattgaaaaacgattgctgaagggacggatagatggtaataagca
tgacggacaacaaaaacatcttcaacatgtagctgcttctgaatctgtctctgaaaatat
gaacaacccttctggaccagcgttgggtcccgactggtgttctcaaatagactttcagaa
aatttcggaaaaatctgaaaaccgatcggtgactatcttgcgtaattgtgttataacaag
caccgatacgtcccaaaatttgtcggtacattacatggataaagaaaagatggcagataa
ccagctcaatccagatatttttatttgggcaggaggtgtaactgccaactcagaagtctg
ggctatgaataaaatgctccaaatcactgaaaatagtggaattaaagtcaacgacgcttg
cgaaacctcacttcctaatgtttttgcatgtggagatgtttgtgcactgactacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTCGACGTGACATGGCTGATC 76 143 492 Antisense
TAGCTGCTTCTGAATCTGTCTCTGA 590 651 641 Antisense
AAATATGAACAACCCTTCTGGACCA 631 113 666 Antisense
TTCTGGACCAGCGTTGGGTCCCGAC 543 687 681 Antisense
TCCCGACTGGTGTTCTCAAATAGAC 122 589 699 Antisense
AACCGATCGGTGACTATCTTGCGTA 379 147 751 Antisense
TAACAAGCACCGATACGTCCCAAAA 636 149 785 Antisense
GGCAGATAACCAGCTCAATCCAGAT 556 535 843 Antisense
GTCAACGACGCTTGCGAAACCTCAC 221 463 958 Antisense
ACCTCACTTCCTAATGTTTTTGCAT 51 89 976 Antisense
GGAGATGTTTGTGCACTGACTACCA 58 519 1003 Antisense
Sequence Source Affymetrix Proprietary Database