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[189135_at] 7TM chemoreceptor, srh family

Description C46E10.7 /REP_DB=WormBase Gene ID /WP=CE20565 /TR=O44715 /GB=AAD32273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 37      6grp_cgc > 52      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.8
(-3)
A 		2.8
(-2.5)
A 		2
(-2.9)
A 		12.8
(3)
A 		11
B 40.4
(3)
A 		22
(0.2)
A 		1.3
(-3)
A 		7.8
(-2)
A 		39
C 4.7
(1)
A 		6.2
(3)
A 		1.7
(-3)
A 		4.4
(0.6)
A 		5
avr 15.6
(3) 		10.3
(0.7) 		1.7
(-3) 		8.3
(-0.2) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 12.5
(-0.4)
A 		26.1
(3)
A 		23.2
(2.3)
A 		2.2
(-3)
A 		9.2
(-1.2)
A 		2.6
(-2.9)
A 		24
B 29.3
(3)
A 		13.9
(-0.3)
A 		13.4
(-0.4)
A 		3.6
(-2.5)
A 		1.5
(-3)
A 		13.6
(-0.4)
A 		28
C 5.2
(-2.2)
A 		25.5
(2)
A 		7.7
(-1.7)
A 		30.6
(3)
A 		29.6
(2.8)
A 		1.2
(-3)
A 		29
avr 15.7
(0.7) 		21.8
(3) 		14.8
(0.4) 		12.1
(-0.6) 		13.4
(-0.2) 		5.8
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.7
(-2.1)
A 		0.6
(-2.6)
A 		0.5
(-3)
A 		1.9
(3)
A 		1
B 12.9
(3)
A 		5.4
(-0.6)
A 		0.3
(-3)
A 		1.7
(-2.3)
A 		13
C 1.6
(2)
A 		1.8
(3)
A 		0.6
(-3)
A 		0.7
(-2.5)
A 		1
avr 5.1
(3) 		2.6
(-0.3) 		0.5
(-3) 		1.4
(-1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.3
(-1.8)
A 		9.3
(3)
A 		5.1
(0.1)
A 		0.6
(-3)
A 		2.8
(-1.5)
A 		0.6
(-3)
A 		9
B 10.2
(3)
A 		4.6
(-0.5)
A 		3.3
(-1.3)
A 		1
(-2.8)
A 		0.6
(-3)
A 		5.1
(-0.2)
A 		10
C 1.9
(-2)
A 		7.8
(1.8)
A 		2
(-2)
A 		6.2
(0.8)
A 		9.6
(3)
A 		0.4
(-3)
A 		9
avr 4.8
(0.2) 		7.2
(3) 		3.5
(-1.3) 		2.6
(-2.3) 		4.3
(-0.3) 		2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4690
Sequence Type Exemplar sequence
Representative Public ID C46E10.7 NCBI
Target Description C46E10.7 /REP_DB=WormBase Gene ID /WP=CE20565 /TR=O44715 /GB=AAD32273.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062226 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-99) (srh-99) mRNA, complete cds. 11/11 None
C46E10.7 ENSEMBL cdna:known chromosome:CEL140:II:3714994:3716549:-1 gene:C46E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3714992-3716548(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-99
Ensembl C46E10.7
Entrez Gene 183509 Entrez gene
SwissProt O44715 EMBL-EBI
WormBase CE20565 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD32273 Serpentine receptor, class h protein 99 [Caenorhabditis elegans] ref|NP_494627.1| Serpentine Receptor, class H family member (srh-99) [Caenorhabditis elegans] 1.0E-158
blast C88108 protein C46E10.7 [imported] - Caenorhabditis elegans 1.0E-153
blast AAD32272 Serpentine receptor, class h protein 100 [Caenorhabditis elegans] ref|NP_494626.1| Serpentine Receptor, class H family member (srh-100) [Caenorhabditis elegans] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494627.1 6 35-53,66-88,108-130,151-173,209-231,260-282
C46E10.7 6 35-53,66-88,108-130,151-173,209-231,260-282
Sequence
Target Sequence 
>C. ELEGANS:189135_AT
ttgatactactatcctacaccactattttcatatttctcacaattattcctactgaccaa
gaaactgcgatacttcaagcgctgcaagcttacccctgcccaacccaagagtttttcacg
tttccgatccttattctgaactctgattcgacgacttccatgtttataattgcaattttt
atgccaattttcatatgccattcagttggtcattctgtattccatgtctcttgtaccata
tattatttgtacattgctccatcggatttgatttctttagaaacccagaagaagcaaaaa
acgtttctcagaaatgttatactgcaattttcaattccatcaatatttattttattctca
attggtattatttttacatcgagattttattcgcaagaaatgatgaatctaggtgtggat
gttgcaggacttcacggaatcggtgaaagtatagcggtcctcttcgtgcacccaccttat
cggagagccacaggacagctaattttcagatggaaggatccacaatcaagcatacgagtc
tcagctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATACTACTATCCTACACCACTA 621 705 478 Antisense
TTCTCACAATTATTCCTACTGACCA 657 691 512 Antisense
GAAACTGCGATACTTCAAGCGCTGC 440 357 538 Antisense
CTGCCCAACCCAAGAGTTTTTCACG 26 237 573 Antisense
GTTTCCGATCCTTATTCTGAACTCT 259 451 597 Antisense
GAACTCTGATTCGACGACTTCCATG 162 349 615 Antisense
ATGCCAATTTTCATATGCCATTCAG 313 41 658 Antisense
GTATTCCATGTCTCTTGTACCATAT 10 453 694 Antisense
GGATGTTGCAGGACTTCACGGAATC 305 513 894 Antisense
TGAAAGTATAGCGGTCCTCTTCGTG 123 571 921 Antisense
ATCAAGCATACGAGTCTCAGCTGCA 28 27 1002 Antisense
Sequence Source Affymetrix Proprietary Database