[Home] | [Total List]

[189134_s_at] beta tubulin

Description C36E8.5 /REP_DB=WormBase Gene ID /WP=CE00913 /TR=SW:P52275 /GB=CAA84648.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=beta tubulin
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 41      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 07      6grp_total > 42      4grp_total > 41      6grp_cgc > 70      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7681
1 2 3 4 range
A 11852.5
(-3)
P 		16420.9
(1.7)
P 		17643.8
(3)
P 		14818.2
(0.1)
P 		5791
B 10926.4
(-3)
P 		18079.4
(2.6)
P 		18606.9
(3)
P 		14638
(-0.1)
P 		7681
C 11399.2
(-3)
P 		17542.9
(3)
P 		16618.6
(2.1)
P 		13184
(-1.3)
P 		6144
avr 11392.7
(-3) 		17347.7
(2.7) 		17623.1
(3) 		14213.4
(-0.3) 		6230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6500
1 2 3 4 5 6 range
A 10627.2
(-2.2)
P 		12771.9
(0.2)
P 		15194.4
(3)
P 		13374.9
(0.9)
P 		11502.6
(-1.2)
P 		9916.2
(-3)
P 		5278
B 14092.5
(2.2)
P 		12591.2
(0.5)
P 		14837.6
(3)
P 		12674.5
(0.6)
P 		12507.9
(0.4)
P 		9374.7
(-3)
P 		5463
C 12144.1
(0.9)
P 		12328.3
(1.2)
P 		13947.1
(3)
P 		12077.6
(0.9)
P 		13477.5
(2.5)
P 		8694.4
(-3)
P 		5253
avr 12287.9
(0.3) 		12563.8
(0.6) 		14659.7
(3) 		12709
(0.8) 		12496
(0.6) 		9328.4
(-3) 		5331
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3623
1 2 3 4 range
A 4315.5
(2.3)
P 		3564.5
(0.4)
P 		4612.4
(3)
P 		2169.1
(-3)
P 		2443
B 3484.3
(-1.4)
P 		4465.2
(3)
P 		4311.7
(2.3)
P 		3119.4
(-3)
P 		1346
C 3773.5
(-0.4)
P 		5043.7
(1.7)
P 		5792.1
(3)
P 		2223
(-3)
P 		3569
avr 3857.8
(0.4) 		4357.8
(1.6) 		4905.4
(3) 		2503.8
(-3) 		2402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3123
1 2 3 4 5 6 range
A 1959
(-3)
P 		4542.3
(3)
P 		3309
(0.1)
P 		3392.2
(0.3)
P 		3471
(0.5)
P 		2414.3
(-1.9)
P 		2583
B 4903.5
(2.4)
P 		4191.1
(-0.1)
P 		3603
(-2.1)
P 		3357
(-3)
P 		5081.8
(3)
P 		3495.8
(-2.5)
P 		1725
C 4501.3
(3)
P 		3761.7
(0.9)
P 		3549.8
(0.2)
P 		2428.8
(-3)
P 		4361.1
(2.6)
P 		2910.5
(-1.6)
P 		2073
avr 3787.9
(0.7) 		4165
(2.4) 		3487.3
(-0.6) 		3059.3
(-2.5) 		4304.6
(3) 		2940.2
(-3) 		1364
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189134_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7184
Sequence Type Exemplar sequence
Representative Public ID C36E8.5 NCBI
Target Description C36E8.5 /REP_DB=WormBase Gene ID /WP=CE00913 /TR=SW:P52275 /GB=CAA84648.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=beta tubulin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065405 NCBI Caenorhabditis elegans Tubulin, Beta family member (tbb-2) (tbb-2) mRNA, complete cds. 11/11 None
SNAP00000019688 ENSEMBL cdna:SNAP chromosome:CEL140:III:4016040:4017596:-1 11/11 None
GENEFINDER00000019689 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4016040:4017596:-1 11/11 None
C36E8.5.3 ENSEMBL cdna:known chromosome:CEL140:III:4015736:4017601:-1 gene:C36E8.5 11/11 None
C36E8.5.1 ENSEMBL cdna:known chromosome:CEL140:III:4015743:4017601:-1 gene:C36E8.5 11/11 None
C36E8.5.2 ENSEMBL cdna:known chromosome:CEL140:III:4015743:4017607:-1 gene:C36E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4016039-4017596(-) 100.0 100.0
Public Domain and Genome References
Gene Title beta tubulin
Gene Symbol tbb-2
Ensembl C36E8.5
Entrez Gene 175519 Entrez gene
SwissProt P52275 EMBL-EBI
WormBase CE00913 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264699_AT expressed protein at
ATH1-121501:247442_S_AT tubulin beta-2/beta-3 chain (TUB2) at
ATGENOME1:12012_AT expressed protein at
CANINE:1583313_AT similar to tubulin, beta 5 cfa
CANINE_2:CFA.11081.1.S1_AT similar to tubulin, beta 5 cfa
CANINE_2:CFA.5235.1.A1_S_AT similar to tubulin, beta 5 cfa
CANINE_2:CFAAFFX.1628.1.S1_S_AT similar to tubulin, beta 5 cfa
CHICKEN:GGA.4579.1.S1_AT tubulin, beta polypeptide gga
CHICKEN:GGA.4579.1.S1_X_AT tubulin, beta polypeptide gga
HU35KSUBA:RC_AA427899_S_AT tubulin, beta polypeptide hs
HG-U133_PLUS_2:211714_X_AT tubulin, beta polypeptide hs
HG-U133A:211714_X_AT tubulin, beta polypeptide hs
HG-U133A_2:211714_X_AT tubulin, beta polypeptide hs
HG-U95AV2:151_S_AT tubulin, beta polypeptide hs
HC-G110:151_S_AT tubulin, beta polypeptide hs
HG-U95AV2:709_AT tubulin, beta polypeptide hs
HC-G110:709_AT tubulin, beta polypeptide hs
HU35KSUBD:RC_T03306_AT tubulin, beta polypeptide hs
HUGENEFL:V00599_S_AT tubulin, beta polypeptide hs
HUGENEFL:J00314_AT tubulin, beta polypeptide hs
HG-U133A:209026_X_AT tubulin, beta polypeptide hs
HG-U133_PLUS_2:209026_X_AT tubulin, beta polypeptide hs
HG-U133A_2:209026_X_AT tubulin, beta polypeptide hs
U133_X3P:G4929137_3P_S_AT tubulin, beta polypeptide hs
U133_X3P:HS.179661.5.A1_3P_AT tubulin, beta polypeptide hs
HG-U133A_2:212320_AT tubulin, beta polypeptide hs
HG-FOCUS:212320_AT tubulin, beta polypeptide hs
HG-U133_PLUS_2:212320_AT tubulin, beta polypeptide hs
HG-U133A:212320_AT tubulin, beta polypeptide hs
HG-U95E:80545_R_AT tubulin, beta polypeptide hs
MOE430A:1416256_A_AT tubulin, beta 5 mm
MOUSE430_2:1416256_A_AT tubulin, beta 5 mm
MOUSE430A_2:1416256_A_AT tubulin, beta 5 mm
MOUSE430_2:1455719_AT tubulin, beta 5 mm
MOUSE430A_2:1455719_AT tubulin, beta 5 mm
MOE430A:1455719_AT tubulin, beta 5 mm
MU11KSUBB:MSA.4014.0_F_AT tubulin, beta 5 mm
MU11KSUBB:MSA.30774.0_F_AT tubulin, beta 5 mm
MU11KSUBB:X04663_F_AT tubulin, beta 5 mm
MU11KSUBB:MSA.4014.0_I_AT tubulin, beta 5 mm
MU11KSUBB:MSA.1263.0_F_AT tubulin, beta 5 mm
MU11KSUBB:MSA.11249.0_F_AT tubulin, beta 5 mm
MU11KSUBB:MSA.10829.0_F_AT tubulin, beta 5 mm
MG-U74AV2:94788_F_AT tubulin, beta 5 mm
MG-U74AV2:94789_R_AT tubulin, beta 5 mm
MG-U74BV2:112383_AT tubulin, beta 5 mm
MU11KSUBB:MSA.16875.0_F_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
MU19KSUBA:TC22498_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
MU19KSUBB:TC26673_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
MU19KSUBB:TC26675_F_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
MU19KSUBB:TC26675_I_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
MU19KSUBB:TC33441_AT Tubulin, beta 5, mRNA (cDNA clone MGC:6228 IMAGE:3601177) mm
RN-U34:RC_AA860030_S_AT tubulin, beta 5 rn
RG-U34A:RC_AA860030_S_AT tubulin, beta 5 rn
RN-U34:AB011679_AT tubulin, beta 5 rn
RG-U34A:AB011679_AT tubulin, beta 5 rn
RN-U34:RC_AI229707_S_AT tubulin, beta 5 rn
RG-U34C:RC_AI229707_S_AT tubulin, beta 5 rn
RN-U34:RC_AA943532_S_AT tubulin, beta 5 rn
RG-U34B:RC_AA943532_S_AT tubulin, beta 5 rn
RAE230A:1387892_AT tubulin, beta 5 rn
RAT230_2:1387892_AT tubulin, beta 5 rn
RAE230A:1370290_AT tubulin, beta 5 rn
RAT230_2:1370290_AT tubulin, beta 5 rn
RG-U34B:RC_AA850450_F_AT Tubulin, beta 5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
46785 microtubule polymerization inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
45298 tubulin inferred from electronic annotation QuickGO AmiGO
45298 tubulin inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3924 GTPase activity inferred from electronic annotation QuickGO AmiGO
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE72883 Hypothetical protein CBG20196 [Caenorhabditis briggsae] 0.0
blast CAA84648 Hypothetical protein C36E8.5 [Caenorhabditis elegans] ref|NP_497806.1| Tubulin, Beta family member (tbb-2) [Caenorhabditis elegans] sp|P52275|TBB2_CAEEL Tubulin beta-2 chain (Beta-2 tubulin) 0.0
blast CAB07246 Hypothetical protein K01G5.7 [Caenorhabditis elegans] ref|NP_499367.1| Tubulin, Beta family member (tbb-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003008 EMBL-EBI Tubulin/FtsZ, GTPase 5.3E-113
Pfam IPR008280 EMBL-EBI Tubulin/FtsZ, C-terminal 6.7E-80
Sequence
Target Sequence 
>C. ELEGANS:189134_S_AT
gctcacccaacaaatgttcgatgccaagaacatgatggctgcctgtgacccaagacacgg
acgttacctgaccgtggccgctatgttccgtggacgcatgtcgatgagagaggttgacga
gcaaatgctcaacgttcagaacaagaactcgtcctacttcgtcgaatggatcccgaacaa
cgtcaagaccgccgtttgtgacatcccaccaagaggactcaagatggctgccaccttcgt
tggaaactcgaccgctatccaagagcttttcaagcgtatctcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCACCCAACAAATGTTCGATGCC 620 301 876 Antisense
CTGTGACCCAAGACACGGACGTTAC 690 239 918 Antisense
GAGCAAATGCTCAACGTTCAGAACA 211 391 994 Antisense
GTTCAGAACAAGAACTCGTCCTACT 500 443 1009 Antisense
GTCCTACTTCGTCGAATGGATCCCG 217 457 1026 Antisense
TGGATCCCGAACAACGTCAAGACCG 412 547 1042 Antisense
GTCAAGACCGCCGTTTGTGACATCC 105 465 1057 Antisense
CCGTTTGTGACATCCCACCAAGAGG 152 265 1067 Antisense
TCGTTGGAAACTCGACCGCTATCCA 466 603 1112 Antisense
TCGACCGCTATCCAAGAGCTTTTCA 468 601 1123 Antisense
CAAGAGCTTTTCAAGCGTATCTCAG 543 183 1135 Antisense
Sequence Source Affymetrix Proprietary Database