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[189133_s_at] oxidoreductase

Description C01G8.3 /REP_DB=WormBase Gene ID /WP=CE07803 /TR=P91013 /GB=AAB37640.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 83      6grp_total > 85      4grp_total > 38      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 437.1
(3)
P 		396.1
(1.2)
P 		297.7
(-3)
P 		317.4
(-2.2)
P 		139
B 467.2
(3)
P 		321.1
(-2.7)
P 		313.3
(-3)
P 		424.8
(1.3)
P 		154
C 459.2
(3)
P 		355.2
(-1.7)
P 		337
(-2.6)
P 		327.2
(-3)
P 		132
avr 454.5
(3) 		357.5
(-1.2) 		316
(-3) 		356.5
(-1.2) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 387
(-1.5)
P 		321.7
(-3)
P 		446.9
(-0.2)
P 		494.7
(0.9)
P 		586.9
(3)
P 		467.8
(0.3)
P 		265
B 320.2
(-3)
P 		441.3
(-0.5)
P 		482.1
(0.4)
P 		608.5
(3)
P 		597.2
(2.8)
P 		550.8
(1.8)
P 		288
C 394.6
(-2.5)
P 		372.2
(-3)
P 		375.6
(-2.9)
P 		610.5
(1.9)
P 		495.8
(-0.5)
P 		663.5
(3)
P 		291
avr 367.3
(-3) 		378.4
(-2.7) 		434.9
(-1) 		571.2
(3) 		560
(2.7) 		560.7
(2.7) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 159.1
(3)
P 		86
(-0.9)
P 		77.8
(-1.3)
P 		46.5
(-3)
P 		113
B 149
(3)
P 		79.3
(-2.5)
P 		72.6
(-3)
P 		90.5
(-1.6)
P 		76
C 152
(3)
P 		102.1
(-0.1)
P 		117.5
(0.9)
P 		55.2
(-3)
P 		97
avr 153.4
(3) 		89.1
(-1.3) 		89.3
(-1.3) 		64.1
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 71.3
(-3)
P 		114.4
(-0.6)
P 		97.3
(-1.5)
P 		125.5
(0.1)
P 		177.1
(3)
P 		113.9
(-0.6)
P 		106
B 111.4
(-3)
P 		146.9
(-1.4)
P 		117.1
(-2.7)
P 		161.2
(-0.7)
P 		242.6
(3)
P 		205.4
(1.3)
P 		131
C 146.3
(-0.6)
P 		113.6
(-2.1)
P 		95.6
(-3)
P 		122.8
(-1.7)
P 		160.4
(0.1)
P 		222.1
(3)
P 		127
avr 109.7
(-2.6) 		125
(-1.6) 		103.3
(-3) 		136.5
(-0.8) 		193.4
(3) 		180.5
(2.1) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189133_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1684
Sequence Type Exemplar sequence
Representative Public ID C01G8.3 NCBI
Target Description C01G8.3 /REP_DB=WormBase Gene ID /WP=CE07803 /TR=P91013 /GB=AAB37640.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=oxidoreductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059156(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059156 NCBI Caenorhabditis elegans C01G8.3 (oxidoreductase) mRNA, complete cds. 11/11 None
SNAP00000016691 ENSEMBL cdna:SNAP chromosome:CEL140:I:5279055:5281519:-1 11/11 None
GENEFINDER00000016700 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5279055:5281519:-1 11/11 None
C01G8.3 ENSEMBL cdna:known chromosome:CEL140:I:5278826:5281519:-1 gene:C01G8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5279054-5281519(-) 100.0 100.0
Public Domain and Genome References
Gene Title oxidoreductase
Gene Symbol dhs-1
Ensembl C01G8.3
Entrez Gene 172172 Entrez gene
SwissProt P91013 EMBL-EBI
WormBase CE07803 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37640 Dehydrogenases, short chain protein 1 [Caenorhabditis elegans] ref|NP_491557.1| C01G8.3 [Caenorhabditis elegans] 0.0
blast CAE67382 Hypothetical protein CBG12865 [Caenorhabditis briggsae] 1.0E-164
blast NP_001017231 retinol dehydrogenase 14 (all-trans and 9-cis) [Xenopus tropicalis] 6.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.4E-22
Sequence
Target Sequence 
>C. ELEGANS:189133_S_AT
tgttgtcgttgaacgtcttctcccacttcttctgaaaactgatcgacctgatttcaaatc
acgcgtcattgtagtttcaagtggtctttatcgaaatgcagaagcaattccacaagtttc
gaaattattgggtcaaaagacgtatgattacagtccaaaacaggcgtatgctttcagtaa
acttgccaattgcctgtataccggcgcactttcaaaaatgcttgaaccacacaacgtcgg
tgtctattgtgttcgtccgggttttgtgaatggaaccgagttgggccgggaaactcattg
gattcttcgtgctctcgctgcaccaattatttggttcattgcaaaaacgctggaacaggg
ctgcgaaacaattgtatatctggcagagacatcgggaaatcagctgaaaaatggttcgat
gtactatgagaggaaagaagaagcatataatgagatggttgaagtgacgtcgatccgcca
agtttgggcaattcttcgacaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTCGTTGAACGTCTTCTCCCA 510 563 381 Antisense
AAATCACGCGTCATTGTAGTTTCAA 22 117 436 Antisense
AGGCGTATGCTTTCAGTAAACTTGC 368 53 542 Antisense
CAATTGCCTGTATACCGGCGCACTT 708 179 567 Antisense
AATGCTTGAACCACACAACGTCGGT 136 167 597 Antisense
ACGTCGGTGTCTATTGTGTTCGTCC 297 95 614 Antisense
GTGTTCGTCCGGGTTTTGTGAATGG 330 483 629 Antisense
AAACTCATTGGATTCTTCGTGCTCT 610 127 671 Antisense
GCTCTCGCTGCACCAATTATTTGGT 402 299 691 Antisense
ATGGTTGAAGTGACGTCGATCCGCC 364 51 835 Antisense
AGTTTGGGCAATTCTTCGACACCTA 477 63 861 Antisense
Sequence Source Affymetrix Proprietary Database