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[189132_at]

Description E02D9.1 /REP_DB=WormBase Gene ID /WP=CE27902 /TR=Q9TYV7 /GB=AAC78159.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 01      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 47.8
(2.6)
A 		12
(-2.1)
A 		4.9
(-3)
A 		51.1
(3)
P 		46
B 85.9
(3)
P 		30.3
(-1)
A 		3.2
(-3)
A 		51.8
(0.5)
A 		83
C 42
(-0.6)
P 		4
(-3)
A 		3.2
(-3)
A 		101.3
(3)
P 		98
avr 58.6
(2.1) 		15.4
(-1.9) 		3.8
(-3) 		68.1
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.2
(-0.1)
A 		29.5
(1.5)
A 		38
(3)
P 		4
(-3)
A 		27.8
(1.2)
P 		22
(0.2)
A 		34
B 32.5
(3)
P 		12.1
(-3)
A 		13.1
(-2.7)
A 		19.7
(-0.8)
A 		25.3
(0.9)
P 		20.9
(-0.4)
A 		20
C 17.1
(-1.4)
A 		38.5
(3)
M 		9.2
(-3)
A 		24.8
(0.2)
A 		10.3
(-2.8)
A 		22.7
(-0.2)
P 		29
avr 23.3
(1.1) 		26.7
(3) 		20.1
(-0.8) 		16.2
(-3) 		21.1
(-0.2) 		21.9
(0.3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 17.4
(3)
A 		2.6
(-2.5)
A 		1.3
(-3)
A 		7.5
(-0.7)
P 		16
B 27.4
(3)
P 		7.5
(-1.5)
A 		0.7
(-3)
A 		11
(-0.7)
A 		27
C 13.9
(1.8)
P 		1.1
(-3)
A 		1.1
(-3)
A 		17.1
(3)
P 		16
avr 19.6
(3) 		3.7
(-2.1) 		1
(-3) 		11.9
(0.5) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.7
(-1.3)
A 		10.5
(3)
A 		8.3
(1.6)
P 		1
(-3)
A 		8.4
(1.7)
P 		5.4
(-0.2)
A 		10
B 11.3
(3)
P 		4
(-2.4)
A 		3.2
(-3)
A 		5.2
(-1.5)
A 		10.3
(2.3)
P 		7.8
(0.4)
A 		8
C 6.3
(-0.4)
A 		11.7
(3)
M 		2.3
(-3)
A 		5
(-1.3)
A 		3.3
(-2.4)
A 		7.6
(0.4)
P 		9
avr 7.1
(1.1) 		8.7
(3) 		4.6
(-1.9) 		3.7
(-3) 		7.3
(1.3) 		6.9
(0.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1734
Sequence Type Exemplar sequence
Representative Public ID E02D9.1 NCBI
Target Description E02D9.1 /REP_DB=WormBase Gene ID /WP=CE27902 /TR=Q9TYV7 /GB=AAC78159.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170893, NM_170890, NM_170892
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000044089 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6808558:6812927:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170890 6/11 Cross Hyb Matching Probes None
NM_170892 6/11 Cross Hyb Matching Probes A 
NM_170893 6/11 Cross Hyb Matching Probes A 
SNAP00000044087 6/11 Cross Hyb Matching Probes None
E02D9.1c 6/11 Cross Hyb Matching Probes A 
E02D9.1a 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6810262-6812858(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740881 E02D9.1a [Caenorhabditis elegans] gb|AAC78159.2| Hypothetical protein E02D9.1a [Caenorhabditis elegans] 0.0
blast CAE67310 Hypothetical protein CBG12765 [Caenorhabditis briggsae] 1.0E-148
blast NP_740882 E02D9.1d [Caenorhabditis elegans] gb|AAY44016.1| Hypothetical protein E02D9.1d [Caenorhabditis elegans] 1.0E-102
Protein Families
Method ID Description E-Value
hanks 1.9.3 AGC group; AGC Other; Mast205 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.3E-37
Pfam IPR000719 EMBL-EBI Protein kinase 0.26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044089 1 735-757
Sequence
Target Sequence 
>C. ELEGANS:189132_AT
ttttctgttcatcaaagtgttgcactttcacttattcgtgcaattcgacatgtttggaat
agtggaccgggttatattcatcgtgatataaaaccggagaatattcttgtaaattcacaa
ggatatgtcaagatttgtgattttggagcagctaagagaattgacaatacatacaggata
gcatcatcggcagcaggtacacaaatgtatcaagcacctgaacaacagatgggacaagat
tatagcgaaaaagtcgatatttggtgtttcgggctcacactttgggaatttgctatcggt
ccgaatctggaagaatatctcaatggattgtcatcttatgaagagattactgtagaaccg
attgatggttttccagagtcattggctgttcttatatctaattgcctctattcacatacc
aattttgtcaaaatgtttttcctggttccaaaaactagctgttctttttattttattgca
ctttcgacgagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTGTTCATCAAAGTGTTGCAC 316 675 766 Antisense
AGTGTTGCACTTTCACTTATTCGTG 190 59 781 Antisense
GACATGTTTGGAATAGTGGACCGGG 646 369 812 Antisense
GTGGACCGGGTTATATTCATCGTGA 202 485 827 Antisense
GATAGCATCATCGGCAGCAGGTACA 116 423 942 Antisense
AATGTATCAAGCACCTGAACAACAG 6 165 969 Antisense
CTTATATCTAATTGCCTCTATTCAC 210 223 1156 Antisense
TGCCTCTATTCACATACCAATTTTG 477 585 1168 Antisense
TGTCAAAATGTTTTTCCTGGTTCCA 214 559 1191 Antisense
TTCCTGGTTCCAAAAACTAGCTGTT 322 699 1204 Antisense
ATTTTATTGCACTTTCGACGAGTTT 155 15 1235 Antisense
Sequence Source Affymetrix Proprietary Database