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[189131_at] Zinc finger

Description R05D3.3 /REP_DB=WormBase Gene ID /WP=CE00282 /TR=SW:P34536 /GB=AAK21442.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger
Cluster 6grp_total > 99      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 5.7
(-2.7)
A 		3.6
(-3)
A 		20.2
(-1)
A 		52.7
(3)
A 		49
B 32.6
(1.2)
A 		4.4
(-3)
A 		44.9
(3)
A 		41.5
(2.5)
A 		41
C 5.3
(-2.8)
A 		36.5
(3)
A 		4
(-3)
A 		34.9
(2.7)
A 		33
avr 14.5
(-3) 		14.8
(-2.9) 		23
(-1.2) 		43
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 30.5
(-2)
A 		35.8
(-1)
A 		25
(-3)
A 		27.8
(-2.5)
A 		57.1
(3)
A 		55.4
(2.7)
A 		32
B 38.8
(-0.1)
A 		7.7
(-2.8)
A 		4.9
(-3)
A 		26.4
(-1.2)
A 		68
(2.4)
M 		75.5
(3)
P 		71
C 25
(-3)
A 		57.1
(3)
A 		38.3
(-0.5)
A 		43.7
(0.5)
A 		50.4
(1.7)
A 		38.9
(-0.4)
P 		32
avr 31.4
(-1.5) 		33.5
(-1.2) 		22.7
(-3) 		32.6
(-1.3) 		58.5
(3) 		56.6
(2.7) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(-1.9)
A 		0.8
(-3)
A 		5.3
(0.9)
A 		7.7
(3)
A 		7
B 10.4
(3)
A 		1.1
(-3)
A 		10.4
(3)
A 		8.8
(2)
A 		9
C 1.8
(-2.7)
A 		10.5
(3)
A 		1.4
(-3)
A 		5.9
(-0)
A 		9
avr 4.8
(-1.8) 		4.1
(-3) 		5.7
(-0.2) 		7.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.6
(-2.9)
A 		12.7
(0.7)
A 		5.4
(-3)
A 		7
(-2.2)
A 		17.2
(3)
A 		13.5
(1.1)
A 		12
B 13.5
(-0.3)
A 		2.6
(-2.7)
A 		1.2
(-3)
A 		7
(-1.7)
A 		27.6
(2.9)
M 		28.1
(3)
P 		27
C 9.3
(-2.7)
A 		17.4
(3)
A 		9.7
(-2.4)
A 		8.8
(-3)
A 		16.3
(2.2)
A 		13
(-0.1)
P 		9
avr 9.5
(-1.4) 		10.9
(-0.8) 		5.4
(-3) 		7.6
(-2.1) 		20.4
(3) 		18.2
(2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7374
Sequence Type Exemplar sequence
Representative Public ID R05D3.3 NCBI
Target Description R05D3.3 /REP_DB=WormBase Gene ID /WP=CE00282 /TR=SW:P34536 /GB=AAK21442.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Zinc finger
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066445 NCBI Caenorhabditis elegans R05D3.3 (R05D3.3) mRNA, complete cds. 11/11 None
SNAP00000035979 ENSEMBL cdna:SNAP chromosome:CEL140:III:8364758:8366253:1 11/11 None
GENEFINDER00000035991 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8364758:8366253:1 11/11 None
R05D3.3 ENSEMBL cdna:known chromosome:CEL140:III:8364547:8366417:1 gene:R05D3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8364753-8366249(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger
Ensembl R05D3.3
Entrez Gene 187601 Entrez gene
SwissProt P34536 EMBL-EBI
WormBase CE00282 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21442 Hypothetical protein R05D3.3 [Caenorhabditis elegans] ref|NP_498846.1| R05D3.3 [Caenorhabditis elegans] sp|P34536|YNC3_CAEEL Hypothetical zinc finger protein R05D3.3 in chromosome III 0.0
blast CAE71278 Hypothetical protein CBG18161 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:189131_AT
gaatcacatcgaagctcatctgaactaccgtccatacaagtgctccgcgtgcagctatgc
cagacgtcgtgaaatctttgtagatcaacacatcagaactcagcacaaaggtgttgaagg
agttgtgatgcttagtgatgtggatcttcatgttgccatggaagttgatcgccttgctga
agaatgtgtgactagaacacgtaaaatcatcgacacaatgcaagaaaagaaagatggtga
tttcggagaaaacaaggactttgacgagaaagctctccaaatgatgcttgcagaagaagc
tgaaaataaggttgtggtgatcgagtctgtgagccaagtccgtccgaaagttgccaacta
tcatcgaagacaacgtacaaaggttctcaagaaaatctacgataccgatgtagccaagca
gaccgagttgaaaattgtgaaagacgaagaaggaggtgttccgacgatgtcgataaaact
ggaggaaggatttgagatcaatttagaggatttgatgaagatggttggagctggaagttc
gatcactgattcaaatgaacctgggcccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACATCGAAGCTCATCTGAAC 663 327 678 Antisense
TCATCTGAACTACCGTCCATACAAG 518 621 693 Antisense
TGCAGCTATGCCAGACGTCGTGAAA 99 569 727 Antisense
AGATCAACACATCAGAACTCAGCAC 173 67 759 Antisense
GATGTGGATCTTCATGTTGCCATGG 176 409 814 Antisense
GGAAGTTGATCGCCTTGCTGAAGAA 512 531 837 Antisense
AGCTCTCCAAATGATGCTTGCAGAA 174 81 948 Antisense
GATACCGATGTAGCCAAGCAGACCG 325 423 1078 Antisense
GAAGGAGGTGTTCCGACGATGTCGA 127 335 1126 Antisense
GGAGCTGGAAGTTCGATCACTGATT 48 521 1204 Antisense
TGATTCAAATGAACCTGGGCCCAGT 408 561 1224 Antisense
Sequence Source Affymetrix Proprietary Database