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[189130_at] cytochrome P450

Description C41G6.1 /REP_DB=WormBase Gene ID /WP=CE15699 /TR=O17655 /GB=CAB02827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 05      4grp_total > 43      6grp_cgc > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 98.2
(0.3)
A 		114.2
(3)
A 		88.1
(-1.4)
A 		78.4
(-3)
A 		36
B 80.5
(-2.6)
A 		152.8
(3)
A 		113.3
(-0.1)
A 		75.5
(-3)
A 		77
C 115.8
(-1.8)
A 		147.4
(1.7)
A 		105.5
(-3)
A 		159
(3)
A 		54
avr 98.2
(-3) 		138.1
(3) 		102.3
(-2.4) 		104.3
(-2.1) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 102
(3)
A 		90.5
(1.6)
A 		74.1
(-0.5)
A 		54.4
(-3)
A 		86.9
(1.1)
A 		79
(0.1)
A 		48
B 97.3
(1.5)
A 		93.6
(1.2)
A 		75.8
(-0.1)
A 		36.2
(-3)
A 		117.9
(3)
A 		53.7
(-1.7)
A 		82
C 96.5
(1.6)
A 		110.2
(3)
A 		101.7
(2.1)
A 		65.5
(-1.5)
A 		52.7
(-2.8)
A 		51
(-3)
A 		59
avr 98.6
(3) 		98.1
(2.9) 		83.9
(1.1) 		52
(-3) 		85.8
(1.4) 		61.2
(-1.8) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 35.8
(3)
A 		24.8
(0.3)
A 		23
(-0.2)
A 		11.5
(-3)
A 		24
B 25.7
(-0.3)
A 		37.7
(3)
A 		26.3
(-0.2)
A 		16.1
(-3)
A 		22
C 38.3
(1.4)
A 		42.4
(3)
A 		36.8
(0.8)
A 		26.8
(-3)
A 		16
avr 33.3
(2.4) 		35
(3) 		28.7
(0.8) 		18.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 18.8
(-1.4)
A 		32.2
(3)
A 		16.1
(-2.3)
A 		13.8
(-3)
A 		26.2
(1)
A 		19.2
(-1.2)
A 		18
B 33.9
(0.8)
A 		31.1
(0.4)
A 		18.4
(-1.6)
A 		9.6
(-3)
A 		47.9
(3)
A 		20
(-1.4)
A 		38
C 35.8
(3)
A 		33.6
(2.4)
A 		25.9
(0.4)
A 		13.2
(-3)
A 		17.1
(-2)
A 		17.1
(-2)
A 		23
avr 29.5
(2.2) 		32.3
(3) 		20.1
(-0.6) 		12.2
(-3) 		30.4
(2.4) 		18.8
(-1) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13416
Sequence Type Exemplar sequence
Representative Public ID C41G6.1 NCBI
Target Description C41G6.1 /REP_DB=WormBase Gene ID /WP=CE15699 /TR=O17655 /GB=CAB02827.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074364 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-34A3) (cyp-34A3) mRNA, complete cds. 11/11 None
SNAP00000010439 ENSEMBL cdna:SNAP chromosome:CEL140:V:15229357:15232661:1 11/11 None
GENEFINDER00000010445 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15230678:15232661:1 11/11 None
C41G6.1 ENSEMBL cdna:known chromosome:CEL140:V:15230678:15232661:1 gene:C41G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15230677-15232661(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-34A3
Ensembl C41G6.1
Entrez Gene 183378 Entrez gene
SwissProt O17655 EMBL-EBI
WormBase CE15699 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17843_S_AT cytochrome P450, putative at
ATGENOME1:18551_AT cytochrome P450, putative at
ATH1-121501:245072_S_AT cytochrome P450, putative at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02827 Hypothetical protein C41G6.1 [Caenorhabditis elegans] ref|NP_506765.1| CYtochrome P450 family member (cyp-34A3) [Caenorhabditis elegans] 0.0
blast AAC47935 Cytochrome p450 family protein 34A5 [Caenorhabditis elegans] ref|NP_504099.1| CYtochrome P450 family member (cyp-34A5) [Caenorhabditis elegans] 0.0
blast AAC47939 Cytochrome p450 family protein 34A9 [Caenorhabditis elegans] ref|NP_504103.2| CYtochrome P450 family member (cyp-34A9) [Caenorhabditis elegans] 0.0
blast CAB02827 Hypothetical protein C41G6.1 [Caenorhabditis elegans] ref|NP_506765.1| CYtochrome P450 family member (cyp-34A3) [Caenorhabditis elegans] 1.0E-124
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.1E-86
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.5E-25
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.8E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000010439 4 10-32,55-77,97-119,216-235
Sequence
Target Sequence 
>C. ELEGANS:189130_AT
agaaggcattgactccacttttacgctggaaagccttgcgatcgatctatttgatctatg
gctagcgggacaggatacctcttctacaacactcctttgggctggcatctgcttgctaaa
ccatcccgaagttgtggaaaaactgagatcagaactcctcgaagtaactggaggcatacg
aagattatcactgaccgatcgggcacgcacgccgtatttaatggcagttttgaatgaaat
ccagagaattgcatcaatccttaatatcaacatattccgtgaacttcgagaagacacgga
aattgatggtcaacctattgctgctggaaccgttgtagctaatcaactatccatgatcca
cacagacgaagaattgttcgaagatcatactagattcgaccccgaacggttcatcgagaa
cagtactttagagaaaaagctcatcccatttaatctcggaaaacgatcgtgccccggaga
atcattggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGGCATTGACTCCACTTTTACG 689 73 861 Antisense
GGAAAGCCTTGCGATCGATCTATTT 629 527 888 Antisense
TAGCGGGACAGGATACCTCTTCTAC 480 651 923 Antisense
TTTGGGCTGGCATCTGCTTGCTAAA 5 665 956 Antisense
TTATCACTGACCGATCGGGCACGCA 664 679 1045 Antisense
GGGCACGCACGCCGTATTTAATGGC 288 493 1061 Antisense
GTCAACCTATTGCTGCTGGAACCGT 637 463 1169 Antisense
ACTATCCATGATCCACACAGACGAA 698 101 1206 Antisense
TTCGACCCCGAACGGTTCATCGAGA 211 695 1255 Antisense
AAAGCTCATCCCATTTAATCTCGGA 643 123 1296 Antisense
GATCGTGCCCCGGAGAATCATTGGC 238 417 1325 Antisense
Sequence Source Affymetrix Proprietary Database