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[189125_s_at]

Description R11G1.4 /REP_DB=WormBase Gene ID /WP=CE04835 /TR=Q21946 /GB=AAA82319.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      4grp_highest_8_8 > 26      4grp_high_8_8 > 58      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 626.4
(2.7)
P 		562.3
(1.1)
P 		639.8
(3)
P 		400.4
(-3)
P 		239
B 735.1
(3)
P 		490.5
(-1.3)
P 		609.8
(0.8)
P 		392.2
(-3)
P 		343
C 557.1
(0.8)
P 		627.1
(1.9)
P 		696.4
(3)
P 		320.6
(-3)
P 		376
avr 639.5
(2.8) 		560
(1.1) 		648.7
(3) 		371.1
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 684
1 2 3 4 5 6 range
A 636.7
(1.1)
P 		801.3
(3)
P 		590.6
(0.6)
P 		438.8
(-1.1)
P 		572.3
(0.4)
P 		275.6
(-3)
P 		526
B 894.8
(2.3)
P 		960
(3)
P 		758.9
(0.7)
P 		493.9
(-2.3)
P 		516.1
(-2)
P 		428.1
(-3)
P 		532
C 705.5
(2.2)
P 		749.9
(3)
P 		552.6
(-0.6)
P 		520.9
(-1.2)
P 		443.9
(-2.6)
P 		423
(-3)
P 		327
avr 745.7
(1.8) 		837.1
(3) 		634
(0.4) 		484.5
(-1.6) 		510.8
(-1.2) 		375.6
(-3) 		462
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 228.1
(3)
P 		122.1
(-0.8)
P 		167.3
(0.8)
P 		58.6
(-3)
P 		170
B 234.4
(3)
P 		121.1
(-1.5)
P 		141.3
(-0.7)
P 		83.6
(-3)
P 		151
C 184.4
(1.1)
P 		180.3
(1)
P 		242.7
(3)
P 		54.1
(-3)
P 		189
avr 215.6
(3) 		141.2
(0) 		183.8
(1.7) 		65.4
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 117.4
(-1.6)
P 		285
(3)
P 		128.6
(-1.3)
P 		111.3
(-1.8)
P 		172.7
(-0.1)
P 		67.1
(-3)
P 		218
B 311.3
(2.7)
P 		319.5
(3)
P 		184.3
(-1.3)
P 		130.8
(-3)
P 		209.7
(-0.5)
P 		159.6
(-2.1)
P 		189
C 261.5
(3)
P 		228.8
(1.7)
P 		140.6
(-1.6)
P 		104.8
(-3)
P 		143.6
(-1.5)
P 		141.6
(-1.6)
P 		157
avr 230.1
(1.2) 		277.8
(3) 		151.2
(-1.7) 		115.6
(-3) 		175.3
(-0.8) 		122.8
(-2.7) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189125_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18349
Sequence Type Exemplar sequence
Representative Public ID R11G1.4 NCBI
Target Description R11G1.4 /REP_DB=WormBase Gene ID /WP=CE04835 /TR=Q21946 /GB=AAA82319.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171946(11), NM_171654(11), NM_001029688(11), NM_001029689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171946 NCBI Caenorhabditis elegans R11G1.6b (R11G1.6) mRNA, complete cds. 11/11 None
NM_171654 NCBI Caenorhabditis elegans R11G1.6a (R11G1.6) mRNA, complete cds. 11/11 None
NM_001029688 NCBI Caenorhabditis elegans R11G1.6c (R11G1.6) mRNA, complete cds. 11/11 None
NM_001029689 NCBI Caenorhabditis elegans R11G1.6d (R11G1.6) mRNA, complete cds. 11/11 None
SNAP00000030132 ENSEMBL cdna:SNAP chromosome:CEL140:X:3639491:3639836:-1 9/11 None
GENEFINDER00000030142 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3639491:3644842:-1 11/11 None
R11G1.6b ENSEMBL cdna:known chromosome:CEL140:X:3639176:3644883:-1 gene:R11G1.6 11/11 None
R11G1.6a ENSEMBL cdna:known chromosome:CEL140:X:3639176:3644842:-1 gene:R11G1.6 11/11 None
R11G1.6c ENSEMBL cdna:known chromosome:CEL140:X:3639491:3644493:-1 gene:R11G1.6 11/11 None
R11G1.6d ENSEMBL cdna:known chromosome:CEL140:X:3639491:3644470:-1 gene:R11G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3637246-3650102(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11G1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51497 Hypothetical protein R11G1.6b [Caenorhabditis elegans] ref|NP_741753.1| R11G1.6b [Caenorhabditis elegans] 0.0
blast AAM51496 Hypothetical protein R11G1.6a [Caenorhabditis elegans] ref|NP_741752.1| R11G1.6a [Caenorhabditis elegans] 0.0
blast CAE68458 Hypothetical protein CBG14248 [Caenorhabditis briggsae] 0.0
blast AAP46274 Hypothetical protein R11G1.6c [Caenorhabditis elegans] ref|NP_001024859.1| R11G1.6c [Caenorhabditis elegans] 0.0
blast AAP46275 Hypothetical protein R11G1.6d [Caenorhabditis elegans] ref|NP_001024860.1| R11G1.6d [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000008 EMBL-EBI C2 domain 3.2E-5
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 1.4E-8
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 1.1E-11
Pfam IPR000008 EMBL-EBI C2 domain 3.2E-5
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 1.4E-8
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 1.1E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741753.1 2 50-72,84-106
NP_741752.1 2 50-72,84-106
R11G1.6b 2 50-72,84-106
R11G1.6a 2 50-72,84-106
GENEFINDER00000030142 2 50-72,84-106
Sequence
Target Sequence 
>C. ELEGANS:189125_S_AT
gtttttccaagcaagcttatcagtgcagagactgcaaaatggtatgccataaaacttgtc
actacaaaaccgatgcattctgcactcagagtaatgtttccaaactgcaaatagcaaaag
acgtcgattgggctcacttcctcagtcattatcaattggaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTCCAAGCAAGCTTATCAGTG 469 449 3620 Antisense
GCAAGCTTATCAGTGCAGAGACTGC 289 321 3630 Antisense
CAGAGACTGCAAAATGGTATGCCAT 561 205 3645 Antisense
GGTATGCCATAAAACTTGTCACTAC 234 505 3660 Antisense
TTGTCACTACAAAACCGATGCATTC 296 707 3675 Antisense
AACCGATGCATTCTGCACTCAGAGT 165 147 3687 Antisense
TGCACTCAGAGTAATGTTTCCAAAC 414 577 3700 Antisense
AATGTTTCCAAACTGCAAATAGCAA 558 163 3712 Antisense
GCAAATAGCAAAAGACGTCGATTGG 511 317 3726 Antisense
CTCACTTCCTCAGTCATTATCAATT 89 229 3752 Antisense
CCTCAGTCATTATCAATTGGAAGAA 582 265 3759 Antisense
Sequence Source Affymetrix Proprietary Database