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[189124_at]

Description R11G1.4 /REP_DB=WormBase Gene ID /WP=CE04835 /TR=Q21946 /GB=AAA82319.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_high1_10_10 > 12      4grp_high_8_8 > 37      6grp_total > 22      4grp_total > 34      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 135.8
(3)
P 		134
(2.5)
M 		124.8
(-0)
P 		114.1
(-3)
P 		22
B 128.3
(-3)
P 		133.8
(-1.5)
P 		151
(3)
P 		139.3
(-0.1)
P 		23
C 108.1
(-3)
P 		207
(2.8)
P 		120.9
(-2.2)
A 		209.8
(3)
P 		102
avr 124.1
(-3) 		158.3
(3) 		132.2
(-1.6) 		154.4
(2.3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 111.8
(0.5)
A 		133
(1.7)
M 		156.8
(3)
P 		114.3
(0.6)
A 		109.8
(0.4)
A 		48.9
(-3)
A 		108
B 142
(1.4)
P 		169
(3)
P 		168.5
(3)
P 		109.3
(-0.6)
P 		107.8
(-0.7)
A 		68.5
(-3)
P 		101
C 136.2
(1.6)
P 		154.5
(3)
P 		128.1
(1)
P 		107.8
(-0.6)
A 		76.4
(-3)
P 		78.1
(-2.9)
A 		78
avr 130
(1.5) 		152.2
(3) 		151.1
(2.9) 		110.5
(0.1) 		98
(-0.7) 		65.2
(-3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 49.5
(3)
P 		29.1
(-0.7)
M 		32.6
(-0.1)
P 		16.7
(-3)
P 		33
B 40.9
(3)
P 		33
(-1.2)
P 		35
(-0.2)
P 		29.7
(-3)
P 		11
C 35.8
(-2.9)
P 		59.5
(3)
P 		42.1
(-1.3)
A 		35.4
(-3)
P 		24
avr 42.1
(3) 		40.5
(2.4) 		36.6
(0.8) 		27.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 20.6
(-1.5)
A 		47.3
(3)
M 		34.1
(0.8)
P 		29
(-0.1)
A 		33.1
(0.6)
A 		11.9
(-3)
A 		35
B 49.4
(1.7)
P 		56.3
(3)
P 		40.9
(0)
P 		28.9
(-2.3)
P 		43.8
(0.6)
A 		25.5
(-3)
P 		31
C 50.5
(3)
P 		47.1
(2.3)
P 		32.6
(-0.7)
P 		21.7
(-3)
A 		24.7
(-2.4)
P 		26.1
(-2.1)
A 		29
avr 40.2
(0.9) 		50.2
(3) 		35.9
(0) 		26.5
(-1.9) 		33.9
(-0.4) 		21.2
(-3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18349
Sequence Type Exemplar sequence
Representative Public ID R11G1.4 NCBI
Target Description R11G1.4 /REP_DB=WormBase Gene ID /WP=CE04835 /TR=Q21946 /GB=AAA82319.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029687, NM_076226
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076226 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-1) (sax-1) mRNA, complete cds. A 
GENEFINDER00000030141 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3646642:3650122:-1 None
NM_001029687 NCBI Caenorhabditis elegans Sensory AXon guidance family member (sax-1) (sax-1) mRNA, complete cds. None
SNAP00000030134 ENSEMBL cdna:SNAP chromosome:CEL140:X:3647232:3650122:-1 None
R11G1.4a.1 ENSEMBL cdna:known chromosome:CEL140:X:3645866:3650137:-1 gene:R11G1.4 None
R11G1.4a.2 ENSEMBL cdna:known chromosome:CEL140:X:3645866:3650139:-1 gene:R11G1.4 None
R11G1.4b ENSEMBL cdna:known chromosome:CEL140:X:3646311:3650101:-1 gene:R11G1.4 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171946 4/11 Cross Hyb Matching Probes A 
NM_171654 5/11 Cross Hyb Matching Probes A 
NM_001029688 4/11 Cross Hyb Matching Probes None
NM_001029689 5/11 Cross Hyb Matching Probes None
SNAP00000030132 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030142 5/11 Cross Hyb Matching Probes None
SNAP00000030133 3/11 Cross Hyb Matching Probes None
R11G1.6b 4/11 Cross Hyb Matching Probes A 
R11G1.6a 5/11 Cross Hyb Matching Probes A 
R11G1.6c 4/11 Cross Hyb Matching Probes A 
R11G1.6d 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3637246-3650102(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39666 Sensory axon guidance protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024858.1| Sensory AXon guidance family member (sax-1) [Caenorhabditis elegans] 0.0
blast AAK82913 Sensory axon guidance protein 1, isoform a [Caenorhabditis elegans] ref|NP_508627.4| Sensory AXon guidance family member (sax-1) [Caenorhabditis elegans] gb|AAF91417.1| SAX-1 Ndr protein kinase [Caenorhabditis elegans] 0.0
blast T16718 hypothetical protein R11G1.4 - Caenorhabditis elegans 0.0
Protein Families
Method ID Description E-Value
hanks 1.9.4 AGC group; AGC Other; cot-1 9.0E-91
hanks 1.9.4 AGC group; AGC Other; cot-1 7.0E-91
hanks 1.9.4 AGC group; AGC Other; cot-1 6.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-74
Pfam IPR000719 EMBL-EBI Protein kinase 7.0E-74
Sequence
Target Sequence 
>C. ELEGANS:189124_AT
gagccagctgcatctcgattaatgaggaaaggaaagaaacttcacatctacaacgatcat
acatttgttgccgtcaaagtaaaaggcggtgccacgtgcaatgtgtgccagcaaaggatt
cgaagcagtttttccaagcaagcttatcagtgcagagactgcaaaatggtatgccataaa
acttgtcactacaaaaccgatgcattctgcactcagagtaatgtttccaaactgcaaata
gcaaaagacgtcgattgggctcacttcctcagtcattatcaattggaagaatttatttcc
aaccttaaacttataagtgacatcattgctacaactttcgttatatcaaacatccacgtt
tttcctcgaatttccaaaaaagctcacatatctcatcatttgcctattcttttttcactt
tgcaaccaccccagacgtttccacttccaagacaaacttttagtcttaaatgaatcattt
gtcaagtgcacaaggacgacaggattggagtctttttttgcaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAGCTGCATCTCGATTAATGA 417 385 3493 Antisense
GAAACTTCACATCTACAACGATCAT 163 357 3528 Antisense
ACGATCATACATTTGTTGCCGTCAA 395 93 3545 Antisense
AAAGGCGGTGCCACGTGCAATGTGT 390 121 3574 Antisense
GGATTCGAAGCAGTTTTTCCAAGCA 395 505 3608 Antisense
GACATCATTGCTACAACTTTCGTTA 65 371 3811 Antisense
TATCAAACATCCACGTTTTTCCTCG 669 655 3836 Antisense
AGCTCACATATCTCATCATTTGCCT 35 81 3873 Antisense
TATTCTTTTTTCACTTTGCAACCAC 311 663 3897 Antisense
GACGTTTCCACTTCCAAGACAAACT 161 377 3926 Antisense
GGATTGGAGTCTTTTTTTGCACCGA 190 507 3994 Antisense
Sequence Source Affymetrix Proprietary Database