[Home] | [Total List]

[189121_s_at]

Description F53F10.2 /REP_DB=WormBase Gene ID /WP=CE10982 /TR=O01579 /GB=AAB52428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=decarbaxylase
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 27      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 57      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2170
1 2 3 4 range
A 3803.6
(2.5)
P 		2444.8
(-1.8)
P 		2081.7
(-3)
P 		3949
(3)
P 		1867
B 3415.1
(0.5)
P 		2469.5
(-2.3)
P 		2250.6
(-3)
P 		4251.2
(3)
P 		2001
C 3571.3
(1.4)
P 		2586.9
(-2.4)
P 		2420
(-3)
P 		3985.9
(3)
P 		1566
avr 3596.7
(1.5) 		2500.4
(-2.2) 		2250.8
(-3) 		4062
(3) 		1811

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1569
1 2 3 4 5 6 range
A 2981.4
(3)
P 		2843.3
(2)
P 		2242.4
(-2.4)
P 		2204.8
(-2.7)
P 		2161.8
(-3)
P 		2728.5
(1.1)
P 		820
B 3319.3
(3)
P 		2873.4
(0.9)
P 		2159.2
(-2.4)
P 		2041.9
(-3)
P 		2141.7
(-2.5)
P 		2596.9
(-0.4)
P 		1277
C 3130.7
(3)
P 		2615.3
(0.8)
P 		2552.8
(0.5)
P 		1750.4
(-3)
P 		2246.1
(-0.8)
P 		2423.7
(-0.1)
P 		1380
avr 3143.8
(3) 		2777.3
(1.1) 		2318.1
(-1.3) 		1999
(-3) 		2183.2
(-2) 		2583
(0.1) 		1145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 863
1 2 3 4 range
A 1384.9
(3)
P 		530.7
(-3)
P 		544.2
(-2.9)
P 		578.1
(-2.7)
P 		854
B 1089.1
(3)
P 		609.9
(-2.1)
P 		521.5
(-3)
P 		905.9
(1.1)
P 		568
C 1182.2
(3)
P 		743.7
(-2.2)
P 		843.4
(-1)
P 		672.1
(-3)
P 		510
avr 1218.7
(3) 		628.1
(-3) 		636.4
(-2.9) 		718.7
(-2.1) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 808
1 2 3 4 5 6 range
A 549.6
(-2.3)
P 		1011.2
(3)
P 		488.3
(-3)
P 		559.2
(-2.2)
P 		652.4
(-1.1)
P 		664.3
(-1)
P 		523
B 1155
(3)
P 		956.4
(1.1)
P 		524.3
(-3)
P 		540.8
(-2.8)
P 		870.1
(0.3)
P 		968.4
(1.2)
P 		631
C 1160.4
(3)
P 		798
(0.3)
P 		649.7
(-0.8)
P 		352
(-3)
P 		726.8
(-0.2)
P 		811.4
(0.4)
P 		808
avr 955
(3) 		921.9
(2.6) 		554.1
(-2.1) 		484
(-3) 		749.8
(0.4) 		814.7
(1.2) 		471
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189121_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.87
Sequence Type Exemplar sequence
Representative Public ID F53F10.2 NCBI
Target Description F53F10.2 /REP_DB=WormBase Gene ID /WP=CE10982 /TR=O01579 /GB=AAB52428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=decarbaxylase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170847 NCBI Caenorhabditis elegans F53F10.2a (decarbaxylase) mRNA, complete cds. 11/11 None
SNAP00000021858 ENSEMBL cdna:SNAP chromosome:CEL140:I:3832248:3833792:1 11/11 None
GENEFINDER00000021864 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3832248:3833792:1 11/11 None
F53F10.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:3832248:3834126:1 gene:F53F10.2 11/11 None
F53F10.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:3832248:3834156:1 gene:F53F10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170848 3/11 Cross Hyb Matching Probes None
F53F10.2b.1 3/11 Cross Hyb Matching Probes None
F53F10.2b.2 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171958 2 1 NM_170847 189121_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3832247-3833792(+) 100.0 100.0
Public Domain and Genome References
Ensembl F53F10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52428 Hypothetical protein F53F10.2a [Caenorhabditis elegans] ref|NP_740833.1| F53F10.2a [Caenorhabditis elegans] 0.0
blast CAE66675 Hypothetical protein CBG12014 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189121_S_AT
gatttctctgcaagcatcggacgtttccttgtgacaaatgcattcacattgtgcacaaat
gttattggaaaacgtgcaatggacgccaaatttattacaaacgatgatttcgatgatgga
gttggatttgtatatcaaaccaatgatggtgtatatggatcatttggatgcaagcaaatg
gatattaaaccattgtgtaaaccattggatgttgagaatgactctgaagagcaactacat
ttcggaacgattctcggcccaactttggatggaaccgatgttgctcaaagactcatgaaa
agccgtcaattgcgtgtcggcgagtggctcgtttgggaacaaatgggcgctttcacaatt
cctgttgacagtgagcattcggtgccgcctgtgtattactattctggaaaagaatgctgg
caaaaactaatccacaaagatgaacaacgccgttctccatcgccaagtgtcagtgacaac
gaagatattggaagtgatggtgaaggtggctacgcatcttcatgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTCTGCAAGCATCGGACGTT 200 429 859 Antisense
GCATCGGACGTTTCCTTGTGACAAA 163 307 872 Antisense
TACATTTCGGAACGATTCTCGGCCC 333 643 1094 Antisense
GATTCTCGGCCCAACTTTGGATGGA 643 431 1107 Antisense
GGAACCGATGTTGCTCAAAGACTCA 207 531 1129 Antisense
GTCAATTGCGTGTCGGCGAGTGGCT 517 463 1163 Antisense
AACAAATGGGCGCTTTCACAATTCC 680 131 1196 Antisense
TGCCGCCTGTGTATTACTATTCTGG 447 585 1241 Antisense
AAGATGAACAACGCCGTTCTCCATC 462 155 1295 Antisense
TCTCCATCGCCAAGTGTCAGTGACA 431 609 1312 Antisense
GAAGGTGGCTACGCATCTTCATGTG 302 333 1360 Antisense
Sequence Source Affymetrix Proprietary Database