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[189120_at] ankyrin repeat

Description C01G10.1 /REP_DB=WormBase Gene ID /WP=CE07810 /TR=Q93161 /GB=CAB02703.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin repeat
Cluster 6grp_total > 59      4grp_total > 50      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 4.8
(-2.2)
A 		19.2
(2.9)
A 		19.4
(3)
A 		2.5
(-3)
A 		17
B 0.8
(-2.3)
A 		4
(3)
A 		0.6
(-2.7)
A 		0.4
(-3)
A 		4
C 6.3
(3)
A 		6
(2.7)
A 		0.6
(-3)
A 		3.5
(0.1)
A 		6
avr 4
(-1.5) 		9.7
(3) 		6.9
(0.8) 		2.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 32.6
(3)
A 		1.2
(-2.9)
A 		5.4
(-2.1)
A 		0.6
(-3)
A 		1.4
(-2.9)
A 		30.7
(2.6)
A 		32
B 18.1
(3)
A 		1.1
(-3)
A 		4.6
(-1.7)
A 		1
(-3)
A 		17.4
(2.8)
A 		11.2
(0.6)
M 		17
C 8.7
(-0.6)
A 		0.6
(-3)
A 		3
(-2.3)
A 		1.3
(-2.8)
A 		11.9
(0.3)
A 		21
(3)
M 		20
avr 19.8
(2.6) 		1
(-3) 		4.3
(-2) 		1
(-3) 		10.2
(-0.2) 		21
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-1.3)
A 		4.2
(1.9)
A 		5.1
(3)
A 		0.4
(-3)
A 		5
B 0.2
(-2.3)
A 		1
(3)
A 		0.1
(-3)
A 		0.1
(-3)
A 		1
C 2.1
(3)
A 		1.7
(1.7)
A 		0.2
(-3)
A 		0.6
(-1.7)
A 		2
avr 1.3
(-0.2) 		2.3
(3) 		1.8
(1.4) 		0.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6
(1.8)
A 		0.4
(-2.8)
A 		1.2
(-2.2)
A 		0.2
(-3)
A 		0.4
(-2.8)
A 		7.5
(3)
A 		7
B 6.3
(2.3)
A 		0.4
(-2.9)
A 		1.1
(-2.3)
A 		0.3
(-3)
A 		7.1
(3)
A 		4.2
(0.4)
M 		7
C 3.2
(-0.4)
A 		0.2
(-3)
A 		0.8
(-2.5)
A 		0.3
(-2.9)
A 		3.8
(0.2)
A 		7
(3)
M 		7
avr 5.2
(2) 		0.3
(-3) 		1
(-2.3) 		0.3
(-3) 		3.8
(0.6) 		6.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13895
Sequence Type Exemplar sequence
Representative Public ID C01G10.1 NCBI
Target Description C01G10.1 /REP_DB=WormBase Gene ID /WP=CE07810 /TR=Q93161 /GB=CAB02703.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=ankyrin repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074321 NCBI Caenorhabditis elegans C01G10.1 (C01G10.1) mRNA, complete cds. 11/11 None
SNAP00000004628 ENSEMBL cdna:SNAP chromosome:CEL140:V:15102548:15106975:1 11/11 None
GENEFINDER00000004638 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15100260:15106975:1 11/11 None
C01G10.1 ENSEMBL cdna:known chromosome:CEL140:V:15102920:15106975:1 gene:C01G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15102919-15106975(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin repeat
Ensembl C01G10.1
Entrez Gene 180019 Entrez gene
SwissProt Q93161 EMBL-EBI
WormBase CE07810 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-29
Pfam IPR001357 EMBL-EBI BRCT 1.5E-17
Pfam IPR002110 EMBL-EBI Ankyrin 5.1E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-29
Pfam IPR001357 EMBL-EBI BRCT 1.5E-17
Pfam IPR002110 EMBL-EBI Ankyrin 5.1E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-29
Pfam IPR001357 EMBL-EBI BRCT 1.5E-17
Pfam IPR002110 EMBL-EBI Ankyrin 5.1E-7
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506722.1 1 807-829
C01G10.1 1 807-829
SNAP00000004628 1 705-727
GENEFINDER00000004638 7 20-41,62-84,94-116,128-150,185-207,353-375,1173-1195
Sequence
Target Sequence 
>C. ELEGANS:189120_AT
gaagtttcaagctattacatctgatgaagctaattcaaacactacacatgtcattgtgaa
gacagatgagaacggagctctggaaactgatagtctcgatctactactttgggtattcaa
tggtgcgattattgtcaaagaacagtggatggtggattgtttggaaaatgagacagttat
cgaacaggattcaaaatatttggtggaaaaagttaaatacaagggatcatattacaatac
agttcttcaatggagtgaagccatggcaaaaggagccattccatatttgtatggagtata
ctcagcggttgtcatggtggaatgcaagaatttgctgaaattgaattcacttgtcgcaat
ccacggtggtgtcatgatggaagtttttccaagaaaggagctcttcaatgttggatctca
cccatacaaccatgcaaatcttggacctttgtttttgattcacgatggaaagataaactt
gagcgtctacaaatctgatccggacaagatgtacacactgttcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTCAAGCTATTACATCTGAT 414 337 3012 Antisense
GAAGCTAATTCAAACACTACACATG 55 343 3037 Antisense
GATGAGAACGGAGCTCTGGAAACTG 278 411 3076 Antisense
GCTCTGGAAACTGATAGTCTCGATC 322 299 3088 Antisense
AGTCTCGATCTACTACTTTGGGTAT 145 61 3103 Antisense
TTGGGTATTCAATGGTGCGATTATT 615 707 3120 Antisense
GAGACAGTTATCGAACAGGATTCAA 557 391 3181 Antisense
ATTACAATACAGTTCTTCAATGGAG 290 11 3242 Antisense
GCCATGGCAAAAGGAGCCATTCCAT 394 281 3271 Antisense
TCAGCGGTTGTCATGGTGGAATGCA 512 623 3313 Antisense
GACAAGATGTACACACTGTTCACTG 420 365 3514 Antisense
Sequence Source Affymetrix Proprietary Database