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[189117_s_at]

Description C01F6.3 /REP_DB=WormBase Gene ID /WP=CE02952 /TR=Q27466 /GB=CAA92436.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 51      6grp_total > 02      4grp_total > 30      6grp_highest_sub > 02      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 457
1 2 3 4 range
A 829.4
(3)
P 		493.2
(-2.5)
P 		461.7
(-3)
P 		639.6
(-0.1)
P 		368
B 843.8
(3)
P 		657.9
(0.6)
P 		386.9
(-3)
P 		657.4
(0.6)
P 		457
C 769.7
(3)
P 		517.9
(-1.5)
P 		434
(-3)
P 		702.3
(1.8)
P 		336
avr 814.3
(3) 		556.3
(-1) 		427.5
(-3) 		666.4
(0.7) 		387

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 564
1 2 3 4 5 6 range
A 592
(1.5)
P 		682.1
(3)
P 		532.3
(0.5)
P 		630.5
(2.1)
P 		369.6
(-2.2)
P 		323.9
(-3)
P 		358
B 633.8
(0.1)
P 		829.1
(3)
P 		586.2
(-0.6)
P 		448.7
(-2.7)
P 		592.7
(-0.5)
P 		426.8
(-3)
P 		402
C 738.6
(1.2)
P 		887.9
(3)
P 		388.5
(-3)
P 		486.7
(-1.8)
P 		497.3
(-1.7)
P 		386
(-3)
P 		502
avr 654.8
(0.9) 		799.7
(3) 		502.3
(-1.2) 		522
(-1) 		486.5
(-1.5) 		378.9
(-3) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 302
(3)
P 		107.1
(-2.6)
P 		120.7
(-2.2)
P 		93.6
(-3)
P 		208
B 269.1
(3)
P 		162.5
(-0.6)
P 		89.6
(-3)
P 		140.1
(-1.3)
P 		180
C 254.8
(3)
P 		148.9
(-1.7)
P 		151.3
(-1.6)
P 		118.4
(-3)
P 		136
avr 275.3
(3) 		139.5
(-2.2) 		120.5
(-2.9) 		117.4
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 109.1
(-1.9)
P 		242.6
(3)
P 		115.9
(-1.6)
P 		159.9
(-0)
P 		111.5
(-1.8)
P 		78.9
(-3)
P 		164
B 220.5
(0.9)
P 		276
(3)
P 		142.4
(-2.1)
P 		118.8
(-3)
P 		240.8
(1.7)
P 		159.2
(-1.5)
P 		157
C 273.8
(3)
P 		270.9
(2.9)
P 		98.9
(-3)
P 		97.9
(-3)
P 		160.9
(-0.9)
P 		129.2
(-1.9)
P 		176
avr 201.1
(0.4) 		263.2
(3) 		119.1
(-3) 		125.5
(-2.7) 		171.1
(-0.8) 		122.4
(-2.9) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189117_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9960
Sequence Type Exemplar sequence
Representative Public ID C01F6.3 NCBI
Target Description C01F6.3 /REP_DB=WormBase Gene ID /WP=CE02952 /TR=Q27466 /GB=CAA92436.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000031438 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9102247:9102909:-1 9/11 None
GENEFINDER00000031451 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9102247:9104105:-1 9/11 None
C01F6.3 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:9101753:9103831:-1 gene:C01F6.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11403948-11405936(+) 90.15 90.15
chrIV:9101758-9103837(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T18805 cytochrome P450 CYP4B1 homolog C01F6.3 [similarity] - Caenorhabditis elegans 0.0
blast NP_500637 CYtochrome P450 family member (cyp-31A3) [Caenorhabditis elegans] gb|AAF60444.1| Cytochrome p450 family protein 31A3 [Caenorhabditis elegans] 0.0
blast CAA92741 Hypothetical protein H02I12.8 [Caenorhabditis elegans] emb|CAB07222.3| Hypothetical protein H02I12.8 [Caenorhabditis elegans] ref|NP_502152.3| CYtochrome P450 family member (cyp-31A2) [Caenorhabditis elegans] 0.0
blast T18805 cytochrome P450 CYP4B1 homolog C01F6.3 [similarity] - Caenorhabditis elegans 1.0E-115
blast CAA92741 Hypothetical protein H02I12.8 [Caenorhabditis elegans] emb|CAB07222.3| Hypothetical protein H02I12.8 [Caenorhabditis elegans] ref|NP_502152.3| CYtochrome P450 family member (cyp-31A2) [Caenorhabditis elegans] 1.0E-108
blast NP_500637 CYtochrome P450 family member (cyp-31A3) [Caenorhabditis elegans] gb|AAF60444.1| Cytochrome p450 family protein 31A3 [Caenorhabditis elegans] 1.0E-107
Protein Families
Method ID Description E-Value
p450 CP11_MICTO Animalia; CYP1A; Mto; CP11_MICTO; Microgadus tomcod; Q92148 8.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 6.4E-86
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 7.7E-7
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.8E-86
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031451 1 46-78
Sequence
Target Sequence 
>C. ELEGANS:189117_S_AT
acacattcatgttagagggtcacgatacaacatctacaggattaatgtgggcagttcatc
ttctgggaaatcatcccgacgttcagagaaaagttcaagcggaactggatgaagtaatgg
gcgacgatgaagatgtgactattgaacatctctccagaatgaaatatcttgaatgtgcat
tgaaagaagctctgcgtctctttccatctgttttaattattacgagagaactgagtgatg
atcaagtaattggaggctttaatattccaaaaggagtcacttttctgctcaacctgtacc
ttgttcaccgcgatcctgctcaatggaaggatcctgatgttttcgatccggatcgtttcc
atcctgaaaactcaattggtcgaaaatcattcgcctttatcccattctcagctggaagcc
gtaattgcatcggtcaacgttttgcacttatggaagagaaggtcatcatggctcatttgt
tgagaaatttcaatataaaagctgtcgagttgatgcacgaggtccgtccaaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACATTCATGTTAGAGGGTCACGA 185 109 674 Antisense
TCTGGGAAATCATCCCGACGTTCAG 285 607 735 Antisense
ATCATCCCGACGTTCAGAGAAAAGT 538 27 743 Antisense
TGAAATATCTTGAATGTGCATTGAA 165 571 833 Antisense
TTCCATCTGTTTTAATTATTACGAG 131 699 875 Antisense
GGATCGTTTCCATCCTGAAAACTCA 585 511 1023 Antisense
GCTGGAAGCCGTAATTGCATCGGTC 14 295 1084 Antisense
GCATCGGTCAACGTTTTGCACTTAT 527 307 1100 Antisense
GGTCAACGTTTTGCACTTATGGAAG 187 503 1105 Antisense
GTCGAGTTGATGCACGAGGTCCGTC 479 473 1177 Antisense
GATGCACGAGGTCCGTCCAAAAATG 169 413 1185 Antisense
Sequence Source Affymetrix Proprietary Database