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[189115_s_at] aminopeptidase

Description W03G9.4 /REP_DB=WormBase Gene ID /WP=CE14560 /TR=O44750 /GB=AAB96739.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=aminopeptidase
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 55      6grp_total > 63      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1450
1 2 3 4 range
A 1749.2
(0.3)
P 		2338
(3)
P 		2203.9
(2.4)
P 		1032.7
(-3)
P 		1305
B 1801.1
(0.1)
P 		2263.5
(2.1)
P 		2482.9
(3)
P 		1070.2
(-3)
P 		1413
C 1598.5
(-0.3)
P 		1845.3
(0.8)
P 		2299.2
(3)
P 		1039
(-3)
P 		1260
avr 1716.3
(0.1) 		2148.9
(2.2) 		2328.7
(3) 		1047.3
(-3) 		1281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1087
1 2 3 4 5 6 range
A 1339.1
(-3)
P 		1449.8
(-2.3)
P 		2282.6
(3)
P 		1669.9
(-0.9)
P 		1573.1
(-1.5)
P 		1602.2
(-1.3)
P 		944
B 1430.1
(-3)
P 		1633.8
(-1.7)
P 		2354
(3)
P 		1745.5
(-1)
P 		1527.5
(-2.4)
P 		1562
(-2.1)
P 		924
C 1267.1
(-3)
P 		1480.9
(-1)
P 		1911.7
(3)
P 		1863.9
(2.6)
P 		1624.2
(0.3)
P 		1638.7
(0.5)
P 		645
avr 1345.4
(-3) 		1521.5
(-1.7) 		2182.8
(3) 		1759.8
(-0) 		1574.9
(-1.4) 		1601
(-1.2) 		837
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 650
1 2 3 4 range
A 636.9
(3)
P 		507.5
(1.4)
P 		576.1
(2.2)
P 		151.2
(-3)
P 		486
B 574.4
(3)
P 		559
(2.7)
P 		575.4
(3)
P 		228.1
(-3)
P 		347
C 529.1
(0.4)
P 		530.5
(0.4)
P 		801.3
(3)
P 		175.2
(-3)
P 		626
avr 580.1
(2.1) 		532.3
(1.5) 		650.9
(3) 		184.8
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 246.9
(-3)
P 		515.6
(3)
P 		497.1
(2.6)
P 		423.5
(0.9)
P 		474.7
(2.1)
P 		390.1
(0.2)
P 		269
B 497.6
(-1.7)
P 		543.8
(0.1)
P 		571.6
(1.1)
P 		462.3
(-3)
P 		620.6
(3)
P 		582.5
(1.6)
P 		158
C 469.7
(0.3)
P 		451.9
(-0.3)
P 		486.6
(0.9)
P 		374.8
(-3)
P 		525.6
(2.2)
P 		548.6
(3)
P 		174
avr 404.7
(-3) 		503.8
(1.4) 		518.4
(2) 		420.2
(-2.3) 		540.3
(3) 		507.1
(1.5) 		136
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189115_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1806
Sequence Type Exemplar sequence
Representative Public ID W03G9.4 NCBI
Target Description W03G9.4 /REP_DB=WormBase Gene ID /WP=CE14560 /TR=O44750 /GB=AAB96739.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=aminopeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059088 NCBI Caenorhabditis elegans W03G9.4 (aminopeptidase) mRNA, complete cds. 11/11 None
SNAP00000033392 ENSEMBL cdna:SNAP chromosome:CEL140:I:4964895:4967071:-1 11/11 None
GENEFINDER00000033401 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4964895:4970246:-1 11/11 None
W03G9.4.2 ENSEMBL cdna:known chromosome:CEL140:I:4964688:4967090:-1 gene:W03G9.4 11/11 None
W03G9.4.1 ENSEMBL cdna:known chromosome:CEL140:I:4964688:4967086:-1 gene:W03G9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4964894-4967071(-) 100.0 100.0
Public Domain and Genome References
Gene Title aminopeptidase
Gene Symbol app-1
Ensembl W03G9.4
Entrez Gene 172118 Entrez gene
SwissProt O44750 EMBL-EBI
WormBase CE14560 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259296_AT aminopeptidase P, cytosolic, putative at
CANINE:1602465_AT similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble cfa
CANINE_2:CFA.20354.1.S1_S_AT similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble cfa
CANINE_2:CFA.2881.1.S1_AT similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble cfa
CANINE_2:CFAAFFX.16699.1.S1_S_AT similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble cfa
DROSOPHILA_2:1627134_AT Aminopeptidase P dm
DROSGENOME1:153980_AT Aminopeptidase P dm
CHICKEN:GGAAFFX.5375.1.S1_S_AT similar to X-prolyl aminopeptidase (aminopeptidase P) 1, soluble gga
HG-U133_PLUS_2:208453_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133A:208453_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-FOCUS:208453_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133A_2:208453_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133A_2:209045_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133A:209045_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133_PLUS_2:209045_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HU35KSUBA:H18713_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HU35KSUBC:RC_AA453477_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
U133_X3P:G9739016_3P_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
U133_X3P:G5730117_3P_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
U133_X3P:HS.145315.0.A1_3P_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133_PLUS_2:236239_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133B:236239_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U95AV2:35305_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U95C:52172_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
U133_X3P:HS2.390623.1.S1_3P_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HG-U133_PLUS_2:1559350_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
HU35KSUBD:RC_H37788_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble hs
MU11KSUBA:C79022_RC_S_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble mm
MG-U74AV2:101591_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble mm
MOE430A:1422443_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble mm
MOUSE430A_2:1422443_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble mm
MOUSE430_2:1422443_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble mm
MU19KSUBA:TC23841_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), mRNA mm
MU19KSUBB:TC26787_F_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), mRNA mm
MU19KSUBB:TC31184_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), mRNA mm
RG-U34A:AF038591_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
RAE230A:1370160_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
RAT230_2:1370160_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
RAE230A:1379045_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
RAT230_2:1379045_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
RG-U34A:RC_AI639215_AT X-prolyl aminopeptidase (aminopeptidase P) 1, soluble rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491489 W03G9.4 [Caenorhabditis elegans] gb|AAB96739.1| Aminopeptidase p protein 1 [Caenorhabditis elegans] 0.0
blast CAE73103 Hypothetical protein CBG20483 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.1E-8
Sequence
Target Sequence 
>C. ELEGANS:189115_S_AT
ttcctcctcgattctggagctcattatggagatggaacaaccgatgtgacgagaactgtg
tggtacacgaacccaccgaaagagttcattctgcacaatactcttgtattgaagggacac
attaatttggcacgggccaagttccctgatggtatctatggttctcgtttggacacgctg
actcgtgatgctttatggaagcttggtctcgattttgaacatggtactggacacggtgtt
ggacactaccttaacgtacacgaaggaccgatcggaatcggtcatcgtagtgttccaacc
ggtggagagcttcatgccagccaagtgcttaccattgagccaggattctatgccaaggag
aagtacggaattcgaattgaaaactgttacgaaacagttgaagctgttgtcatgtctaaa
gctcagaacttcttgacattcaagtctctcactttggtgcctattcaaacttcgatcgtc
gacaagtctcttctgattgaagaggaaatcaattggctcaatcaataccacgctcgggtt
ctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCTCCTCGATTCTGGAGCTCATT 635 697 1240 Antisense
GATGGTATCTATGGTTCTCGTTTGG 534 407 1387 Antisense
ACGCTGACTCGTGATGCTTTATGGA 603 91 1414 Antisense
GGAAGCTTGGTCTCGATTTTGAACA 376 531 1436 Antisense
GTTGGACACTACCTTAACGTACACG 10 293 1477 Antisense
GAATCGGTCATCGTAGTGTTCCAAC 226 329 1514 Antisense
GCCAGCCAAGTGCTTACCATTGAGC 125 281 1555 Antisense
CATTCAAGTCTCTCACTTTGGTGCC 276 215 1676 Antisense
GCCTATTCAAACTTCGATCGTCGAC 229 281 1698 Antisense
ATCGTCGACAAGTCTCTTCTGATTG 671 35 1714 Antisense
AATCAATACCACGCTCGGGTTCTGA 633 149 1759 Antisense
Sequence Source Affymetrix Proprietary Database