[Home] | [Total List]

[189114_at]

Description C34F11.3 /REP_DB=WormBase Gene ID /WP=CE04164 /CHR=2 /FEA=Sanger Annotation /DEF=AMP deaminase (ST.LOUIS) TR:Q18463 protein_id:AAA85762.1
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 57      6grp_total > 36      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2567
1 2 3 4 range
A 5400.7
(3)
P 		4003.1
(-1)
P 		3310.6
(-3)
P 		4707.2
(1)
P 		2090
B 5877.8
(3)
P 		3438
(-3)
P 		3654.7
(-2.5)
P 		5087.4
(1.1)
P 		2440
C 5150.5
(3)
P 		3529.9
(-3)
P 		3576.3
(-2.8)
P 		4872
(2)
P 		1621
avr 5476.3
(3) 		3657
(-2.6) 		3513.9
(-3) 		4888.9
(1.2) 		1962

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1321
1 2 3 4 5 6 range
A 3165.9
(3)
P 		2951
(2)
P 		1904.9
(-3)
P 		2254.5
(-1.3)
P 		1980.8
(-2.6)
P 		2741.1
(1)
P 		1261
B 2561.4
(1.7)
P 		2517
(1.4)
P 		2764.1
(3)
P 		2178.8
(-0.8)
P 		1844.7
(-3)
P 		2536.4
(1.5)
P 		919
C 3009.8
(3)
P 		2427.1
(-0.7)
P 		2869.3
(2.1)
P 		2055.7
(-3)
P 		2241.6
(-1.8)
P 		2634.3
(0.6)
P 		954
avr 2912.4
(3) 		2631.7
(1.1) 		2512.8
(0.3) 		2163
(-2.1) 		2022.4
(-3) 		2637.3
(1.1) 		890
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1277
1 2 3 4 range
A 1966.4
(3)
P 		869
(-2.2)
P 		865.4
(-2.2)
P 		689
(-3)
P 		1277
B 1874.4
(3)
P 		849.1
(-3)
P 		846.9
(-3)
P 		1084.1
(-1.6)
P 		1028
C 1705
(3)
P 		1014.9
(-1.7)
P 		1246.4
(-0.1)
P 		821.5
(-3)
P 		884
avr 1848.6
(3) 		911
(-2.7) 		986.2
(-2.3) 		864.9
(-3) 		984

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 702
1 2 3 4 5 6 range
A 583.6
(-1.4)
P 		1049.5
(3)
P 		414.9
(-3)
P 		571.8
(-1.5)
P 		597.7
(-1.3)
P 		667.4
(-0.6)
P 		635
B 891.3
(2.1)
P 		837.8
(1.2)
P 		671.2
(-1.5)
P 		577.1
(-3)
P 		749.5
(-0.2)
P 		945.8
(3)
P 		369
C 1115.6
(3)
P 		740.6
(-0.2)
P 		730.3
(-0.3)
P 		413.4
(-3)
P 		725.3
(-0.3)
P 		881.9
(1)
P 		702
avr 863.5
(2.8) 		876
(3) 		605.5
(-1.6) 		520.8
(-3) 		690.8
(-0.1) 		831.7
(2.3) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4812
Sequence Type Exemplar sequence
Representative Public ID C34F11.3 NCBI
Target Description C34F11.3 /REP_DB=WormBase Gene ID /WP=CE04164 /CHR=2 /FEA=Sanger Annotation /DEF=AMP deaminase (ST.LOUIS) TR:Q18463 protein_id:AAA85762.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062573(11), NM_062572(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062573 NCBI Caenorhabditis elegans C34F11.3a (C34F11.3) mRNA, complete cds. 11/11 A 
NM_062572 NCBI Caenorhabditis elegans C34F11.3b (C34F11.3) mRNA, complete cds. 11/11 A 
SNAP00000021330 ENSEMBL cdna:SNAP chromosome:CEL140:II:5203674:5209645:1 11/11 None
GENEFINDER00000021343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5202466:5209645:1 11/11 None
C34F11.3a.2 ENSEMBL cdna:known chromosome:CEL140:II:5203294:5209645:1 gene:C34F11.3 11/11 None
C34F11.3a.1 ENSEMBL cdna:known chromosome:CEL140:II:5203302:5209645:1 gene:C34F11.3 11/11 None
C34F11.3b ENSEMBL cdna:known chromosome:CEL140:II:5203331:5209778:1 gene:C34F11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5202463-5209643(+) 100.0 100.0
Public Domain and Genome References
Ensembl C34F11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21474 Hypothetical protein C34F11.3a [Caenorhabditis elegans] ref|NP_494974.2| C34F11.3a [Caenorhabditis elegans] 0.0
blast AAO21475 Hypothetical protein C34F11.3b [Caenorhabditis elegans] ref|NP_494973.2| C34F11.3b [Caenorhabditis elegans] 0.0
blast CAE59064 Hypothetical protein CBG02349 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189114_AT
atctcttctacatgtaccgcaacatttgcgccttgaatgcattccgccgtgctcgtggac
tcaacacctttgcacttcgtccacattgtggagaggctggccacgtttcgcatctgctca
ccggatacctgaccagtgaaagtattgctcacggaattcttctccgcaaggtgccagttc
ttcagtatttgtattatttgacgcaaattggaatcgccatgtcaccactgtccaacaatt
cgttgttcatcagttaccagcggaatcctttgccagaatatctgcaaaaaggactgaatg
tctctctgtccactgatgatccactccagttccactacaccaaggaagcattgatggaag
aattctcgattgctgctcaagtttggaagctcagctcatgtgatatgtgtgagctcgcga
gaaatagtgtcatgcagagtggatttgaagataaggtcaaaattcactggctcggaccaa
attac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTTCTACATGTACCGCAACAT 262 33 1994 Antisense
CATTTGCGCCTTGAATGCATTCCGC 232 215 2016 Antisense
GCTCACCGGATACCTGACCAGTGAA 316 301 2109 Antisense
ACGGAATTCTTCTCCGCAAGGTGCC 519 89 2144 Antisense
AGGTGCCAGTTCTTCAGTATTTGTA 450 57 2162 Antisense
TTCGTTGTTCATCAGTTACCAGCGG 44 697 2232 Antisense
TTACCAGCGGAATCCTTTGCCAGAA 536 681 2247 Antisense
AGGACTGAATGTCTCTCTGTCCACT 676 55 2283 Antisense
ACTCCAGTTCCACTACACCAAGGAA 444 97 2316 Antisense
GAAGAATTCTCGATTGCTGCTCAAG 401 341 2350 Antisense
AATTCACTGGCTCGGACCAAATTAC 315 175 2454 Antisense
Sequence Source Affymetrix Proprietary Database