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[189113_at] Homeobox domain

Description ZC376.4 /REP_DB=WormBase Gene ID /WP=CE18433 /TR=Q23269 /GB=CAB00886.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Homeobox domain
Cluster 6grp_total > 03      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 204.7
(-1)
A 		173.9
(-1.9)
A 		138.5
(-3)
A 		337.2
(3)
A 		199
B 261
(3)
A 		203.6
(0.8)
A 		101.5
(-3)
A 		198.8
(0.7)
A 		160
C 218.6
(3)
A 		152.5
(-2.7)
A 		148.7
(-3)
A 		216.1
(2.8)
A 		70
avr 228.1
(1.9) 		176.7
(-0.7) 		129.6
(-3) 		250.7
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 230.8
(-0.3)
A 		212
(-1)
A 		313.8
(3)
A 		188.4
(-2)
A 		162
(-3)
A 		162.2
(-3)
A 		152
B 267.7
(2)
A 		301.9
(3)
A 		99.2
(-3)
A 		251.4
(1.5)
A 		209.1
(0.3)
A 		197.6
(-0.1)
A 		203
C 208.4
(-1.7)
A 		273.4
(3)
A 		194.1
(-2.7)
A 		269.8
(2.7)
A 		189.8
(-3)
A 		200.6
(-2.2)
A 		84
avr 235.6
(0.9) 		262.4
(3) 		202.4
(-1.8) 		236.5
(0.9) 		187
(-3) 		186.8
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 74.5
(3)
A 		37.7
(-2.8)
A 		36.2
(-3)
A 		49.4
(-0.9)
A 		38
B 83.2
(3)
A 		50.3
(-0.3)
A 		23.5
(-3)
A 		42.4
(-1.1)
A 		60
C 72.4
(3)
A 		43.8
(-1.8)
A 		51.8
(-0.4)
A 		36.4
(-3)
A 		36
avr 76.7
(3) 		43.9
(-2) 		37.2
(-3) 		42.7
(-2.2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 42.6
(-2.5)
A 		75.4
(3)
A 		68.3
(1.8)
A 		47.8
(-1.6)
A 		48.9
(-1.4)
A 		39.5
(-3)
A 		36
B 93.1
(2.4)
A 		100.5
(3)
A 		24.1
(-3)
A 		66.6
(0.3)
A 		84.9
(1.8)
A 		73.7
(0.9)
A 		76
C 77.2
(1.9)
A 		83.4
(3)
A 		49.4
(-3)
A 		54.3
(-2.1)
A 		61.4
(-0.9)
A 		67.2
(0.1)
A 		34
avr 71
(0.6) 		86.4
(3) 		47.3
(-3) 		56.2
(-1.6) 		65.1
(-0.3) 		60.1
(-1) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14419
Sequence Type Exemplar sequence
Representative Public ID ZC376.4 NCBI
Target Description ZC376.4 /REP_DB=WormBase Gene ID /WP=CE18433 /TR=Q23269 /GB=CAB00886.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Homeobox domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074110 NCBI Caenorhabditis elegans ZC376.4 (ZC376.4) mRNA, complete cds. 11/11 None
SNAP00000015356 ENSEMBL cdna:SNAP chromosome:CEL140:V:14180667:14182069:1 11/11 None
GENEFINDER00000015364 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14180667:14182069:1 11/11 None
ZC376.4 ENSEMBL cdna:known chromosome:CEL140:V:14180667:14182069:1 gene:ZC376.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14180666-14182069(+) 100.0 100.0
Public Domain and Genome References
Gene Title Homeobox domain
Ensembl ZC376.4
Entrez Gene 191149 Entrez gene
SwissProt Q23269 EMBL-EBI
WormBase CE18433 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00886 Hypothetical protein ZC376.4 [Caenorhabditis elegans] ref|NP_506511.1| ZC376.4 [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.29999995231628
Sequence
Target Sequence 
>C. ELEGANS:189113_AT
atgggctcagacgtatcaaattcagcagagaagaattcgaaaatggtttgataatcggcg
aacaagagatagagaacggagaaagagaaaaggagatgacaatgaagattcaagtgaaat
ttcaaaaagaggaagagttacttgtggtctagattacaagaatcatgaagaggaatctac
ggatgattttcaagatgatatagaagagttggataattctcagttcgagatggcaaaagt
ttcatcaatcagagacgagttgaaagacgtcaaatcagaatctccgcctgtaatggaaca
atcttttcatttgagaactgtgcaacacgtttcaacaccacgtagagatcggataattcc
agaaagtcaaacactgtttgttccagccggatgctctctggattatgaaaaatggacgcc
cgcagaatttcttcaatggacttccaactttctatcaagcgcccaagcaatggacatcat
aaaaagccaggaaatctctggagacacaatggaaagtttttttgacgatccagattttcg
aaaagaaaccggaatgccgtatggaccatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTCAGACGTATCAAATTCAG 152 51 144 Antisense
AGACGTCAAATCAGAATCTCCGCCT 146 71 408 Antisense
GAATCTCCGCCTGTAATGGAACAAT 389 329 421 Antisense
GAACTGTGCAACACGTTTCAACACC 546 347 458 Antisense
GTTTCAACACCACGTAGAGATCGGA 68 449 472 Antisense
TCAAACACTGTTTGTTCCAGCCGGA 497 629 510 Antisense
CAGCCGGATGCTCTCTGGATTATGA 603 201 527 Antisense
AAAATGGACGCCCGCAGAATTTCTT 319 133 552 Antisense
GAATTTCTTCAATGGACTTCCAACT 508 325 568 Antisense
ACTTTCTATCAAGCGCCCAAGCAAT 239 103 590 Antisense
ACCGGAATGCCGTATGGACCATTTC 701 87 691 Antisense
Sequence Source Affymetrix Proprietary Database