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[189109_s_at] protein kinase /// protein kinase

Description C34B2.3 /REP_DB=WormBase Gene ID /WP=CE16891 /TR=O44950 /GB=AAB97535.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 99      4grp_total > 06      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.1
(-3)
A 		4.7
(-1.7)
A 		7.5
(0.7)
A 		10.3
(3)
A 		7
B 12.3
(3)
A 		5.9
(-1.5)
A 		9.7
(1.2)
A 		3.7
(-3)
A 		9
C 4.2
(-1.4)
A 		4.6
(-1.1)
A 		2.3
(-3)
A 		9.4
(3)
A 		7
avr 6.5
(0.1) 		5.1
(-3) 		6.5
(0.1) 		7.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 5.3
(-2.9)
A 		3.4
(-3)
A 		2.9
(-3)
A 		20.1
(-2)
A 		106.3
(3)
A 		98.5
(2.5)
P 		103
B 5.8
(-3)
A 		4.5
(-3)
A 		8.7
(-2.9)
A 		8.2
(-2.9)
A 		192.9
(3)
P 		171.8
(2.3)
P 		188
C 2.6
(-3)
A 		3.8
(-2.9)
A 		2.8
(-3)
A 		10
(-2.7)
A 		58.3
(-0.6)
A 		140.5
(3)
P 		138
avr 4.6
(-3) 		3.9
(-3) 		4.8
(-3) 		12.8
(-2.6) 		119.2
(2.2) 		136.9
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.1
(-2.4)
A 		1
(-3)
A 		2
(3)
A 		1.5
(0)
A 		1
B 3.9
(3)
A 		1.5
(-1.6)
A 		2.3
(-0.1)
A 		0.8
(-3)
A 		3
C 1.4
(1.5)
A 		1.3
(0.8)
A 		0.8
(-3)
A 		1.6
(3)
A 		1
avr 2.1
(3) 		1.3
(-3) 		1.7
(-0) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 1
(-2.9)
A 		1.2
(-2.9)
A 		0.6
(-3)
A 		5.1
(-2.1)
A 		32.1
(3)
A 		24
(1.5)
P 		32
B 2
(-3)
A 		1.5
(-3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		78.4
(3)
P 		64.1
(1.9)
P 		77
C 1
(-3)
A 		1.2
(-2.9)
A 		0.7
(-3)
A 		2
(-2.8)
A 		18.9
(-0.6)
A 		47
(3)
P 		46
avr 1.3
(-3) 		1.3
(-3) 		1.1
(-3) 		3.1
(-2.7) 		43.1
(2.7) 		45
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189109_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2130
Sequence Type Exemplar sequence
Representative Public ID C34B2.3 NCBI
Target Description C34B2.3 /REP_DB=WormBase Gene ID /WP=CE16891 /TR=O44950 /GB=AAB97535.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060393(11), NM_059296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060393 NCBI Caenorhabditis elegans C34B2.3 (C34B2.3) mRNA, complete cds. 11/11 A 
NM_059296 NCBI Caenorhabditis elegans F33D11.7 (F33D11.7) mRNA, complete cds. 11/11 A 
SNAP00000028955 ENSEMBL cdna:SNAP chromosome:CEL140:I:5858216:5859964:-1 11/11 None
GENEFINDER00000028965 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5858216:5859964:-1 11/11 None
SNAP00000007243 ENSEMBL cdna:SNAP chromosome:CEL140:I:10680934:10682945:1 11/11 None
GENEFINDER00000007260 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10680934:10682945:1 11/11 None
F33D11.7 ENSEMBL cdna:known chromosome:CEL140:I:5858216:5859964:-1 gene:F33D11.7 11/11 A 
C34B2.3 ENSEMBL cdna:known chromosome:CEL140:I:10680934:10682945:1 gene:C34B2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10680864-10682876(+) 100.0 100.0
chrI:5858223-5859964(-) 91.99 91.99
Public Domain and Genome References
Gene Title protein kinase
protein kinase
Ensembl F33D11.7
C34B2.3
Entrez Gene 172964 Entrez gene
185229 Entrez gene
SwissProt O44950 EMBL-EBI
O44777 EMBL-EBI
WormBase CE34266 Wormbase
CE09897 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97535 Hypothetical protein C34B2.3 [Caenorhabditis elegans] ref|NP_492794.2| C34B2.3 [Caenorhabditis elegans] 0.0
blast AAB96700 Hypothetical protein F33D11.7 [Caenorhabditis elegans] ref|NP_491697.1| F33D11.7 [Caenorhabditis elegans] 0.0
blast CAE67327 Hypothetical protein CBG12789 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189109_S_AT
tgctccgtccgtatttgcaattggaagatacactggtgacaatcaatctgatttaagaaa
tatctatattctcgactttggatttgctcatcagtacatgattaaggatggaacactgaa
acctccgtcagctcatccatggaaatacgtgggaagtcttcgtcatatgccacgtgccgc
atattcgaaagtggaattctcaagaatggaagacttggaaatgtggttctatatgagtgt
tgagctggttaagggatgtcttccgtgggctcatttgaagaaaccaaaagaagtgcatga
ctatcaaaagttgtgccgaaatggtcttcaaatgcgtgaaatgctcggaggtcttccacc
agaattcgtcgacattatgcaaatagttgacaaactttcattcaccgacactccgaacta
cacagaaatctacggacttctcaccaacgcgattctcttcagtggcaaaaatgaattccc
gtacgattgggaggaggctgagatcaacgagttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCGTCCGTATTTGCAATTGGA 523 579 534 Antisense
GATACACTGGTGACAATCAATCTGA 650 423 560 Antisense
AAATATCTATATTCTCGACTTTGGA 77 117 591 Antisense
CTTTGGATTTGCTCATCAGTACATG 530 221 609 Antisense
GGATGGAACACTGAAACCTCCGTCA 18 515 639 Antisense
CTCCGTCAGCTCATCCATGGAAATA 142 235 656 Antisense
GAAGTCTTCGTCATATGCCACGTGC 18 335 686 Antisense
TTCCGTGGGCTCATTTGAAGAAACC 236 697 794 Antisense
AGTTGTGCCGAAATGGTCTTCAAAT 260 63 842 Antisense
GTGAAATGCTCGGAGGTCTTCCACC 74 481 869 Antisense
GAGGAGGCTGAGATCAACGAGTTCA 244 403 1024 Antisense
Sequence Source Affymetrix Proprietary Database