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[189108_at] protein kinase

Description C34B2.3 /REP_DB=WormBase Gene ID /WP=CE16891 /TR=O44950 /GB=AAB97535.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster 6grp_total > 98      4grp_total > 37      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 25
(3)
A 		11.7
(-2.7)
A 		11
(-3)
A 		12
(-2.6)
A 		14
B 6.8
(-1)
A 		12.7
(3)
A 		3.8
(-3)
A 		5.6
(-1.8)
A 		9
C 15.8
(1.2)
A 		11.8
(-0.8)
A 		7.5
(-3)
A 		19.3
(3)
A 		12
avr 15.9
(3) 		12.1
(0.3) 		7.4
(-3) 		12.3
(0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 4.3
(-3)
A 		6.7
(-2.9)
A 		14.6
(-2.6)
A 		13.5
(-2.7)
A 		129.2
(1.6)
A 		166.5
(3)
A 		162
B 7.5
(-3)
A 		20.3
(-2.4)
A 		10.2
(-2.9)
A 		12
(-2.8)
A 		134.6
(3)
A 		125.8
(2.6)
P 		127
C 8.9
(-3)
A 		10.7
(-2.9)
A 		9.5
(-3)
A 		37
(-2.2)
A 		99.6
(-0.3)
A 		211.1
(3)
P 		202
avr 6.9
(-3) 		12.6
(-2.8) 		11.4
(-2.8) 		20.8
(-2.5) 		121.1
(1.3) 		167.8
(3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.1
(3)
A 		2.5
(-2.4)
A 		2.9
(-2)
A 		1.7
(-3)
A 		7
B 2.2
(0.5)
A 		3.1
(3)
A 		0.9
(-3)
A 		1.2
(-2.2)
A 		2
C 5.2
(3)
A 		3.4
(-1.2)
A 		2.6
(-3)
A 		3.3
(-1.4)
A 		3
avr 5.5
(3) 		3
(-1.4) 		2.1
(-3) 		2.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.4
(-2.8)
A 		3.2
(-2.6)
A 		3.4
(-2.6)
A 		39
(2.8)
A 		40.5
(3)
A 		40
B 2.6
(-3)
A 		6.7
(-2.5)
A 		2.5
(-3)
A 		3.2
(-2.9)
A 		54.7
(3)
A 		46.9
(2.1)
P 		52
C 3.3
(-2.9)
A 		3.3
(-2.9)
A 		2.4
(-3)
A 		7.4
(-2.6)
A 		32.2
(-0.4)
A 		70.7
(3)
P 		68
avr 2.2
(-3) 		4.1
(-2.8) 		2.7
(-2.9) 		4.7
(-2.7) 		42
(1.7) 		52.7
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2130
Sequence Type Exemplar sequence
Representative Public ID C34B2.3 NCBI
Target Description C34B2.3 /REP_DB=WormBase Gene ID /WP=CE16891 /TR=O44950 /GB=AAB97535.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060393 NCBI Caenorhabditis elegans C34B2.3 (C34B2.3) mRNA, complete cds. 11/11 A 
SNAP00000007243 ENSEMBL cdna:SNAP chromosome:CEL140:I:10680934:10682945:1 11/11 None
GENEFINDER00000007260 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10680934:10682945:1 11/11 None
C34B2.3 ENSEMBL cdna:known chromosome:CEL140:I:10680934:10682945:1 gene:C34B2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10680864-10682876(+) 100.0 100.0
chrI:5858223-5859964(-) 91.99 91.99
Public Domain and Genome References
Gene Title protein kinase
Ensembl C34B2.3
Entrez Gene 172964 Entrez gene
SwissProt O44950 EMBL-EBI
WormBase CE34266 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97535 Hypothetical protein C34B2.3 [Caenorhabditis elegans] ref|NP_492794.2| C34B2.3 [Caenorhabditis elegans] 0.0
blast AAB96700 Hypothetical protein F33D11.7 [Caenorhabditis elegans] ref|NP_491697.1| F33D11.7 [Caenorhabditis elegans] 0.0
blast CAE67327 Hypothetical protein CBG12789 [Caenorhabditis briggsae] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:189108_AT
tgcggattgagtgttgcccaacaatgcttgaaaggtcttgaagagcttcatcgaatggga
ttcatccatcgcaacgttgctccgtccgtatttgcaattggaagatacactggtgacaat
caatctgatttaagaaatatctatattctcgactttggatttgctcatcagtacatgatt
aaggatggaacactgaaacctccgtcagctcatccatggaaatacgtgggaagtcttcgt
catatgccacgtgccgcatattcgaaagtggaattctcaagaatggaagacttggaaatg
tggttctatatgagtgttgagctggttaagggatgtcttccgtgggctcatttgaagaaa
ccaaaagaagtgcatgactatcaaaagttgtgccgaaatggtcttcaaatgcgtgaaatg
ctcggaggtcttccaccagaattcgtcgacattatgcaaatagttgacaaactttcattc
accgacactccgaactacacagaaatctacggacttctcaccaacgcgattctcttcagt
ggcaaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGATTGAGTGTTGCCCAACAAT 425 583 457 Antisense
TCATATGCCACGTGCCGCATATTCG 446 619 696 Antisense
GCCACGTGCCGCATATTCGAAAGTG 649 279 702 Antisense
GAGTGTTGAGCTGGTTAAGGGATGT 450 401 768 Antisense
TTAAGGGATGTCTTCCGTGGGCTCA 539 681 782 Antisense
GTCTTCCACCAGAATTCGTCGACAT 267 467 884 Antisense
TGACAAACTTTCATTCACCGACACT 511 571 921 Antisense
CGACACTCCGAACTACACAGAAATC 129 253 939 Antisense
GAACTACACAGAAATCTACGGACTT 291 349 948 Antisense
CCAACGCGATTCTCTTCAGTGGCAA 173 275 977 Antisense
GCGATTCTCTTCAGTGGCAAAAATG 161 291 982 Antisense
Sequence Source Affymetrix Proprietary Database